Carubv10011119m.g (Capsella rubella)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Carubv10011119m.g T228306_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
KNAT6
M02037_2.00 		Arabidopsis thaliana
NNWGACNNNN
NNNNGTCWNN		 PBM
Weirauch et al.(2014)
pTH7296 		0.867 1.000
KNOX3_HORVU
M10790_2.00 		Hordeum vulgare Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$KNOX3_01 		0.829 0.807
GRMZM2G135447
M02139_2.00 		Zea mays
DTGACRKS
SMYGTCAH		 PBM
Weirauch et al.(2014)
pTH6328 		0.798 0.789
GRMZM2G087741
M02138_2.00 		Zea mays
NNTGACRKCN
NGMYGTCANN		 PBM
Weirauch et al.(2014)
pTH5816 		0.760 0.754
PK25034.1
M01254_2.00 		Cannabis sativa
NNTGACRKBN
NVMYGTCANN		 PBM
Lambert et al.(2019)
pTH11259 		0.693 0.737
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10011119m Homeodomain 71 130

Links

Other Homeodomain family TFs
Other Capsella rubella TFs

309 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
M413DRAFT_11487 Hebeloma cylindrosporum M413DRAFT_11487 N 0.000
fgenesh2_pm.C_scaffold_11000279 Heterobasidion annosum fgenesh2_pm.C_scaffold_11000279 N 0.000
fgenesh1_pg.C_scaffold_16000030 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_16000030 N 0.000
SERLA73DRAFT_108042 Serpula lacrymans SERLA73DRAFT_108042 N 0.000
SCLCIDRAFT_63827 Scleroderma citrinum SCLCIDRAFT_63827 N 0.000
SCHCODRAFT_234615 Schizophyllum commune SCHCODRAFT_234615 N 0.000
PLICRDRAFT_63415 Plicaturopsis crispa PLICRDRAFT_63415 N 0.000
PLEOSDRAFT_1025243 Pleurotus ostreatus PLEOSDRAFT_1025243 N 0.000
PISMIDRAFT_686643 Pisolithus microcarpus PISMIDRAFT_686643 N 0.000
PILCRDRAFT_818670 Piloderma croceum PILCRDRAFT_818670 N 0.000
PHLGIDRAFT_114860 Phlebiopsis gigantea PHLGIDRAFT_114860 N 0.000
PAXRUDRAFT_822569 Paxillus rubicundulus PAXRUDRAFT_822569 N 0.000
MPER_16289 Moniliophthora perniciosa MPER_16289 N 0.000
Moror_12923 Moniliophthora roreri Moror_12923 N 0.000
AGABI2DRAFT_116501 Agaricus bisporus AGABI2DRAFT_116501 N 0.000
M404DRAFT_991924 Pisolithus tinctorius M404DRAFT_991924 N 0.000
M378DRAFT_102331 Amanita muscaria M378DRAFT_102331 N 0.000
LACBIDRAFT_325649 Laccaria bicolor LACBIDRAFT_325649 N 0.000
K443DRAFT_681008 Laccaria amethystina K443DRAFT_681008 N 0.000
JAAARDRAFT_35993 Jaapia argillacea JAAARDRAFT_35993 N 0.000
HETIRDRAFT_450789 Heterobasidion irregulare HETIRDRAFT_450789 N 0.000
GYMLUDRAFT_146593 Gymnopus luxurians GYMLUDRAFT_146593 N 0.000
GLOTRDRAFT_131862 Gloeophyllum trabeum GLOTRDRAFT_131862 N 0.000
GALMADRAFT_139765 Galerina marginata GALMADRAFT_139765 N 0.000
FIBRA_05220 Fibroporia radiculosa FIBRA_05220 N 0.000
CERSUDRAFT_119893 Ceriporiopsis subvermispora CERSUDRAFT_119893 N 0.000
CC1G_11173 Coprinopsis cinerea CC1G_11173 N 0.000