Carubv10021397m.g (Capsella rubella)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Carubv10021397m.g T228332_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATH1
M10627_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATH1_01 		0.809 0.646
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.636 0.604
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.615 0.438
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.615 0.438
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.615 0.438
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.615 0.438
KNAT7
M01064_2.00 		Arabidopsis thaliana
TGACRKST
ASMYGTCA		 PBM
Sullivan et al.(2014)
pTH9798 		0.604 0.417
KNAT3
M02051_2.00 		Arabidopsis thaliana
NNNGACVBNN
NNVBGTCNNN		 PBM
Weirauch et al.(2014)
pTH7600 		0.600 0.438
KNAT4
M01238_2.00 		Arabidopsis thaliana
NNGACNNNN
NNNNGTCNN		 PBM
Lambert et al.(2019)
pTH9968 		0.600 0.417
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10021397m Homeodomain 211 261

Links

Other Homeodomain family TFs
Other Capsella rubella TFs

1218 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CERSUDRAFT_122924 Ceriporiopsis subvermispora CERSUDRAFT_122924 I 0.000
estExt_fgeneshPB_pg.C_100077 Phycomyces blakesleeanus estExt_fgeneshPB_pg.C_100077 I 0.000
PIIN_05400 Piriformospora indica PIIN_05400 I 0.000
HETIRDRAFT_239856 Heterobasidion irregulare HETIRDRAFT_239856 I 0.000
FOMPIDRAFT_1125211 Fomitopsis pinicola FOMPIDRAFT_1125211 I 0.000
FIBRA_01283 Fibroporia radiculosa FIBRA_01283 I 0.000
M407DRAFT_16768 Tulasnella calospora M407DRAFT_16768 N 0.000
BOTBODRAFT_169843 Botryobasidium botryosum BOTBODRAFT_169843 N 0.000
SERLA73DRAFT_186737 Serpula lacrymans SERLA73DRAFT_186737 N 0.000
SCLCIDRAFT_1221475 Scleroderma citrinum SCLCIDRAFT_1221475 N 0.000
SCHCODRAFT_13988 Schizophyllum commune SCHCODRAFT_13988 N 0.000
PILCRDRAFT_823114 Piloderma croceum PILCRDRAFT_823114 N 0.000
CNE01220 Cryptococcus neoformans CNE01220 N 0.000
PHLGIDRAFT_62123 Phlebiopsis gigantea PHLGIDRAFT_62123 N 0.000
PHACADRAFT_208823 Phanerochaete carnosa PHACADRAFT_208823 N 0.000
Moror_8326 Moniliophthora roreri Moror_8326 N 0.000
M413DRAFT_105950 Hebeloma cylindrosporum M413DRAFT_105950 N 0.000
M404DRAFT_122029 Pisolithus tinctorius M404DRAFT_122029 N 0.000
M378DRAFT_157099 Amanita muscaria M378DRAFT_157099 N 0.000
LACBIDRAFT_306097 Laccaria bicolor LACBIDRAFT_306097 N 0.000
L804_02990 Cryptococcus gattii L804_02990 N 0.000
K443DRAFT_672745 Laccaria amethystina K443DRAFT_672745 N 0.000
JAAARDRAFT_32137 Jaapia argillacea JAAARDRAFT_32137 N 0.000
CY34DRAFT_804807 Suillus luteus CY34DRAFT_804807 N 0.000
GLOTRDRAFT_71884 Gloeophyllum trabeum GLOTRDRAFT_71884 N 0.000
GALMADRAFT_239880 Galerina marginata GALMADRAFT_239880 N 0.000