CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Ciclev10006467m.g *(Citrus clementina)* Homeodomain
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00046 (Homeobox)	IPR001356	Ciclev10006467m.g	T228371_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
PK24181.1 M01252_2.00	Cannabis sativa	NNNNNNNHDH	DHDNNNNNNN	PBM Lambert et al.(2019) pTH11300	0.654	0.727
HDG11 M02039_2.00	Arabidopsis thaliana	DCATTWAWKD	HMWTWAATGH	PBM Weirauch et al.(2014) pTH7664	0.654	0.709
HDG11 M06904_2.00	Arabidopsis thaliana	DCATTWAWTRH	DYAWTWAATGH	Dap-seq OMalley et al.(2016) EDT1_col	0.654	0.709
ATML1 M02048_2.00	Arabidopsis thaliana	NNHNRHYRNN	NNYRDYNDNN	PBM Weirauch et al.(2014) pTH8203	0.653	0.673
ATML1 M10626_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ML1_01	0.653	0.673
PDF2 M06921_2.00	Arabidopsis thaliana	WNVGAATATTCYHTN	NADRGAATATTCBNW	Dap-seq OMalley et al.(2016) PDF2_col	0.641	0.655
PDF2 M10625_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$PDF2_01	0.641	0.655
HDG9 M10628_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$HDG9_01	0.638	0.673
ANL2 M02046_2.00	Arabidopsis thaliana	NCATTWATKNN	NNMATWAATGN	PBM Weirauch et al.(2014) pTH8244	0.619	0.636
ANL2 M06919_2.00	Arabidopsis thaliana	DCATTAAWTRH	DYAWTTAATGH	Dap-seq OMalley et al.(2016) ANL2_col_a	0.619	0.636
ANL2 M06920_2.00	Arabidopsis thaliana	DCATTAAWTRH	DYAWTTAATGH	Dap-seq OMalley et al.(2016) ANL2_colamp_a	0.619	0.636
HDG7 M06931_2.00	Arabidopsis thaliana	DCATTAAWTRH	DYAWTTAATGH	Dap-seq OMalley et al.(2016) HDG7_col_a	0.617	0.655
HDG7 M10629_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$HDG7_01	0.617	0.655
HDG1 M06917_2.00	Arabidopsis thaliana	DCATTAAWTRH	DYAWTTAATGH	Dap-seq OMalley et al.(2016) HDG1_col100_a	0.614	0.618
HDG1 M06918_2.00	Arabidopsis thaliana	DCATTAAWTRH	DYAWTTAATGH	Dap-seq OMalley et al.(2016) HDG1_colamp_a	0.614	0.618
For this family, TFs with SR scores > 0.599* will likely have a similar motif*