Ciclev10009522m.g (Citrus clementina)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Ciclev10009522m.g T228378_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK20392.1
M01250_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11331 		0.705 0.600
PK20392.1
M01251_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11332 		0.705 0.600
ATHB-20
M06912_2.00 		Arabidopsis thaliana
HYAATAATTRD
HYAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_col_a 		0.705 0.564
ATHB-20
M06913_2.00 		Arabidopsis thaliana
HYAATMATTRD
HYAATKATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a 		0.705 0.564
ATHB-22
M02041_2.00 		Arabidopsis thaliana
NNATAATWWWNNN
NNNWWWATTATNN		 PBM
Weirauch et al.(2014)
pTH5883 		0.674 0.509
ATHB-51
M00867_2.00 		Arabidopsis thaliana
ATWATKNN
NNMATWAT		 PBM
Franco-Zorrilla et al.(2014)
ATHB51 		0.655 0.545
ATHB-51
M06927_2.00 		Arabidopsis thaliana
DNCAATAATTGAD
HTCAATTATTGNH		 Dap-seq
OMalley et al.(2016)
LMI1_col_a 		0.655 0.545
ATHB-51
M06928_2.00 		Arabidopsis thaliana
NDNCAATAATTGA
TCAATTATTGNHN		 Dap-seq
OMalley et al.(2016)
LMI1_colamp_a 		0.655 0.545
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10009522m Homeodomain 20 74

Links

Other Homeodomain family TFs
Other Citrus clementina TFs

170 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
NCU05637 Neurospora crassa NCU05637 D
PV05_07246 Exophiala xenobiotica PV05_07246 I
SBOR_0775 Sclerotinia borealis SBOR_0775 I
SAPIO_CDS9377 Scedosporium apiospermum SAPIO_CDS9377 I
PV11_03606 Exophiala sideris PV11_03606 I
PV10_00855 Exophiala mesophila PV10_00855 I
PV09_00512 Verruconis gallopava PV09_00512 I
PV08_03176 Exophiala spinifera PV08_03176 I
PV07_02793 Cladophialophora immunda PV07_02793 I
PV06_04883 Exophiala oligosperma PV06_04883 I
SETTUDRAFT_113025 Setosphaeria turcica SETTUDRAFT_113025 I
PV04_02426 Capronia semiimmersa PV04_02426 I
PTT_11477 Pyrenophora teres PTT_11477 I
PMAA_011030 Talaromyces marneffei PMAA_011030 I
OIDMADRAFT_28300 Oidiodendron maius OIDMADRAFT_28300 I
NEUTE1DRAFT_148609 Neurospora tetrasperma NEUTE1DRAFT_148609 I
MPH_04494 Macrophomina phaseolina MPH_04494 I
MGYG_05848 Microsporum gypseum MGYG_05848 I
MGG_07925 Magnaporthe oryzae MGG_07925 I
SNOG_11524 Phaeosphaeria nodorum SNOG_11524 I
TEQG_07049 Trichophyton equinum TEQG_07049 I
TESG_07963 Trichophyton tonsurans TESG_07963 I
THITE_2126380 Thielavia terrestris THITE_2126380 I
TRV_07523 Trichophyton verrucosum TRV_07523 I
TSTA_006150 Talaromyces stipitatus TSTA_006150 I
UCRPA7_1223 Togninia minima UCRPA7_1223 I
V499_07415 Pseudogymnoascus pannorum V499_07415 I
VDBG_10032 Verticillium alfalfae VDBG_10032 I
Z517_00407 Fonsecaea pedrosoi Z517_00407 I
Z518_01937 Rhinocladiella mackenziei Z518_01937 I
Z518_04811 Rhinocladiella mackenziei Z518_04811 I
Z519_11340 Cladophialophora bantiana Z519_11340 I
AB03036.1 Alternaria brassicicola AB03036.1 I
PMAA_011030 Penicillium marneffei PMAA_011030 I
AOL_s00193g129 Arthrobotrys oligospora AOL_s00193g129 I
COCC4DRAFT_73197 Bipolaris maydis COCC4DRAFT_73197 I
Cob_11078 Colletotrichum orbiculare Cob_11078 I
Cob_09205 Colletotrichum orbiculare Cob_09205 I
CH063_07689 Colletotrichum higginsianum CH063_07689 I
CGGC5_1402 Colletotrichum gloeosporioides CGGC5_1402 I
CFIO01_06850 Colletotrichum fioriniae CFIO01_06850 I
Bcin01g10720 Botrytis cinerea Bcin01g10720 I
ARB_04706 Arthroderma benhamiae ARB_04706 I
COCCADRAFT_6589 Bipolaris zeicola COCCADRAFT_6589 I
A1O9_07137 Exophiala aquamarina A1O9_07137 I
A1O7_02244 Cladophialophora yegresii A1O7_02244 I
A1O5_10463 Cladophialophora psammophila A1O5_10463 I
A1O3_01201 Capronia epimyces A1O3_01201 I
A1O1_04217 Capronia coronata A1O1_04217 I
VDBG_10032 Verticillium albo atrum VDBG_10032 I
SNOG_11524 Stagonospora nodorum SNOG_11524 I
MCYG_06105 Microsporum canis MCYG_06105 I
COCMIDRAFT_35701 Bipolaris oryzae COCMIDRAFT_35701 I
COCSADRAFT_175469 Bipolaris sorokiniana COCSADRAFT_175469 I
COCVIDRAFT_36324 Bipolaris victoriae COCVIDRAFT_36324 I
G647_08755 Cladophialophora carrionii G647_08755 I
GGTG_07647 Gaeumannomyces graminis GGTG_07647 I
GLRG_06548 Colletotrichum graminicola GLRG_06548 I
GMDG_04247 Pseudogymnoascus destructans GMDG_04247 I
GSTUM_00005043001 Tuber melanosporum GSTUM_00005043001 I
H072_4417 Dactylellina haptotyla H072_4417 I
H101_03147 Trichophyton interdigitale H101_03147 I
H102_02228 Trichophyton rubrum H102_02228 I
H105_02247 Trichophyton soudanense H105_02247 I
HMPREF1120_08353 Exophiala dermatitidis HMPREF1120_08353 I
HMPREF1541_00985 Cyphellophora europaea HMPREF1541_00985 I
MCYG_06105 Arthroderma otae MCYG_06105 I