gene19130-v1.0-hybrid (Fragaria vesca)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 gene19130-v1.0-hybrid T228620_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ANL2
M02046_2.00 		Arabidopsis thaliana
NCATTWATKNN
NNMATWAATGN		 PBM
Weirauch et al.(2014)
pTH8244 		0.865 0.930
ANL2
M06919_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
ANL2_col_a 		0.865 0.930
ANL2
M06920_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
ANL2_colamp_a 		0.865 0.930
HDG1
M06917_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG1_col100_a 		0.841 0.860
HDG1
M06918_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG1_colamp_a 		0.841 0.860
PK24181.1
M01252_2.00 		Cannabis sativa
NNNNNNNHDH
DHDNNNNNNN		 PBM
Lambert et al.(2019)
pTH11300 		0.806 0.789
HDG11
M02039_2.00 		Arabidopsis thaliana
DCATTWAWKD
HMWTWAATGH		 PBM
Weirauch et al.(2014)
pTH7664 		0.790 0.772
HDG11
M06904_2.00 		Arabidopsis thaliana
DCATTWAWTRH
DYAWTWAATGH		 Dap-seq
OMalley et al.(2016)
EDT1_col 		0.790 0.772
PDF2
M06921_2.00 		Arabidopsis thaliana
WNVGAATATTCYHTN
NADRGAATATTCBNW		 Dap-seq
OMalley et al.(2016)
PDF2_col 		0.788 0.807
PDF2
M10625_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PDF2_01 		0.788 0.807
ATML1
M02048_2.00 		Arabidopsis thaliana
NNHNRHYRNN
NNYRDYNDNN		 PBM
Weirauch et al.(2014)
pTH8203 		0.786 0.789
ATML1
M10626_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ML1_01 		0.786 0.789
HDG7
M06931_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG7_col_a 		0.786 0.754
HDG7
M10629_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HDG7_01 		0.786 0.754
HDG9
M10628_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HDG9_01 		0.771 0.649
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna19130.1-v1.0-hybrid Homeodomain 131 187

Links

Other Homeodomain family TFs
Other Fragaria vesca TFs

617 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
KLF7 Homo sapiens ENSG00000118263 D
AALB005025 Anopheles albimanus AALB005025 N
AEPI009272 Anopheles epiroticus AEPI009272 N
ADIR007854 Anopheles dirus ADIR007854 N
ADIR001615 Anopheles dirus ADIR001615 N
ACUA027613 Anopheles culicifacies ACUA027613 N
ACUA013442 Anopheles culicifacies ACUA013442 N
ACOM031365 Anopheles coluzzii ACOM031365 N
ACHR000819 Anopheles christyi ACHR000819 N
AATE012616 Anopheles atroparvus AATE012616 N
AATE007240 Anopheles atroparvus AATE007240 N
AARA009353 Anopheles arabiensis AARA009353 N
AFAF002400 Anopheles farauti AFAF002400 N
CLEC005259 Cimex lectularius CLEC005259 N
Ocbimv22007604m.g Octopus bimaculoides Ocbimv22007604m.g N
Tal_R010271 Tyto alba Tal_R010271 N
Tal_R009016 Tyto alba Tal_R009016 N
Ogr15793 Ophisaurus gracilis Ogr15793 N
Ogr15320 Ophisaurus gracilis Ogr15320 N
Myotis_brandtii_Klf3_10026481 Myotis brandtii Myotis_brandtii_Klf3_10026481 N
Myotis_brandtii_Klf2_10008330 Myotis brandtii Myotis_brandtii_Klf2_10008330 N
Cmyd_10014845 Chelonia mydas Cmyd_10014845 N
Cflo_05095--XP_001121583.1_APIME Camponotus floridanus Cflo_05095--XP_001121583.1_APIME N
AMIN011106 Anopheles minimus AMIN011106 N
scaffold1198-EXSNAP2012.7 Pristionchus exspectatus scaffold1198-EXSNAP2012.7 N
nRc.2.0.1.g39355 Romanomermis culicivorax nRc.2.0.1.g39355 N
PPAI000636 Phlebotomus papatasi PPAI000636 N
LLOJ003369 Lutzomyia longipalpis LLOJ003369 N
LLOJ002499 Lutzomyia longipalpis LLOJ002499 N
ASTEI10792 Anopheles stephensi ASTEI10792 N
ASTEI02568 Anopheles stephensi ASTEI02568 N
ASIS018279 Anopheles sinensis ASIS018279 N
AQUA001970 Anopheles quadriannulatus AQUA001970 N
AMIN011476 Anopheles minimus AMIN011476 N
Cflo_00612--XP_001121679.1_APIME Camponotus floridanus Cflo_00612--XP_001121679.1_APIME N
AMEM016792 Anopheles merus AMEM016792 N
AMEM004507 Anopheles merus AMEM004507 N
AMEC020736 Anopheles melas AMEC020736 N
AMEC011358 Anopheles melas AMEC011358 N
AMAM022787 Anopheles maculatus AMAM022787 N
AMAM022739 Anopheles maculatus AMAM022739 N
AFUN004672 Anopheles funestus AFUN004672 N
AFUN003918 Anopheles funestus AFUN003918 N
AFAF005225 Anopheles farauti AFAF005225 N
KLF4 Canis familiaris ENSCAFG00000002797 N
KLF4 Microcebus murinus ENSMICG00000004603 N
KLF8 Microcebus murinus ENSMICG00000001146 N
ENSMEUG00000011825 Macropus eugenii ENSMEUG00000011825 N
ENSMEUG00000010788 Macropus eugenii ENSMEUG00000010788 N
ENSMEUG00000004560 Macropus eugenii ENSMEUG00000004560 N
ENSFALG00000011272 Ficedula albicollis ENSFALG00000011272 N
KLF8 Erinaceus europaeus ENSEEUG00000014292 N
KLF1 Erinaceus europaeus ENSEEUG00000008498 N
KLF8 Choloepus hoffmanni ENSCHOG00000001301 N
KLF4 Choloepus hoffmanni ENSCHOG00000000846 N
KLF7 Tupaia belangeri ENSTBEG00000007537 N
ENSAPLG00000001763 Anas platyrhynchos ENSAPLG00000001763 N
DAPPUDRAFT_55379 Daphnia pulex DAPPUDRAFT_55379 N
CPIJ012897 Culex quinquefasciatus CPIJ012897 N
CPIJ003991 Culex quinquefasciatus CPIJ003991 N
AGAP004994 Anopheles gambiae AGAP004994 N
ADAC008662 Anopheles darlingi ADAC008662 N
ACEP25043 Atta cephalotes ACEP25043 N
ACEP15814 Atta cephalotes ACEP15814 N
AAEL008774 Aedes aegypti AAEL008774 N
CpipJ_CPIJ012897 Culex pipiens CpipJ_CPIJ012897 N
YQE_09845 Dendroctonus ponderosae YQE_09845 N
CpipJ_CPIJ003991 Culex pipiens CpipJ_CPIJ003991 N
Brh_R010138 Buceros rhinoceros Brh_R010138 N
Brh_R008651 Buceros rhinoceros Brh_R008651 N
Brh_R006141 Buceros rhinoceros Brh_R006141 N
Alligator_sinensis_CCG019089.1 Alligator sinensis Alligator_sinensis_CCG019089.1 N
Alligator_sinensis_CCG008730.1 Alligator sinensis Alligator_sinensis_CCG008730.1 N
Alligator_sinensis_CCG008729.1 Alligator sinensis Alligator_sinensis_CCG008729.1 N
Afo_R000937 Aptenodytes forsteri Afo_R000937 N
Aan_R000240 Calypte anna Aan_R000240 N
YQE_12304 Dendroctonus ponderosae YQE_12304 N
Cflo_01441--XP_624772.1_APIME Camponotus floridanus Cflo_01441--XP_624772.1_APIME N
TC003612 Tribolium castaneum TC003612 N
SINV23346 Solenopsis invicta SINV23346 N
SINV21799 Solenopsis invicta SINV21799 N
SINV10616 Solenopsis invicta SINV10616 N
PHUM484450 Pediculus humanus PHUM484450 N
PHUM483510 Pediculus humanus PHUM483510 N
ISCW018441 Ixodes scapularis ISCW018441 N
GB45842 Apis mellifera GB45842 N
ENSTSYG00000005368 Tarsius syrichta ENSTSYG00000005368 N