Gorai.004G038300 (Gossypium raimondii)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Gorai.004G038300 T228698_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
WOX13
M02049_2.00 		Arabidopsis thaliana
YTGATTGA
TCAATCAR		 PBM
Weirauch et al.(2014)
pTH6461 		0.852 0.825
WOX13
M00866_2.00 		Arabidopsis thaliana
NNTGATTGAN
NTCAATCANN		 PBM
Franco-Zorrilla et al.(2014)
WOX13 		0.852 0.825
GRMZM2G038252
M02137_2.00 		Zea mays
HTRATTGV
BCAATYAD		 PBM
Weirauch et al.(2014)
pTH6141 		0.839 0.842
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.004G038300.1 Homeodomain 90 151
Gorai.004G038300.2 Homeodomain 90 151

Links

Other Homeodomain family TFs
Other Gossypium raimondii TFs

348 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MYCFIDRAFT_127068 Pseudocercospora fijiensis MYCFIDRAFT_127068 I 0.000
estExt_Genewise1.C_12176 Mycosphaerella fijiensis estExt_Genewise1.C_12176 I 0.000
estExt_fgenesh1_pg.C_chr_10960 Mycosphaerella graminicola estExt_fgenesh1_pg.C_chr_10960 I 0.000
V499_05963 Pseudogymnoascus pannorum V499_05963 I 0.000
THITE_2108095 Thielavia terrestris THITE_2108095 I 0.000
SEPMUDRAFT_146091 Sphaerulina musiva SEPMUDRAFT_146091 I 0.000
PODANS_2_4060 Podospora anserina PODANS_2_4060 I 0.000
MYCTH_2301920 Myceliophthora thermophila MYCTH_2301920 I 0.000
Mycgr3G107320 Zymoseptoria tritici Mycgr3G107320 I 0.000
AUEXF2481DRAFT_374368 Aureobasidium subglaciale AUEXF2481DRAFT_374368 I 0.000
M438DRAFT_155623 Aureobasidium pullulans M438DRAFT_155623 I 0.000
M437DRAFT_67933 Aureobasidium melanogenum M437DRAFT_67933 I 0.000
GMDG_01905 Pseudogymnoascus destructans GMDG_01905 I 0.000
DOTSEDRAFT_68376 Dothistroma septosporum DOTSEDRAFT_68376 I 0.000
CHGG_07364 Chaetomium globosum CHGG_07364 I 0.000
MPH_08875 Macrophomina phaseolina MPH_08875 N 0.000
LEMA_P115290.1 Leptosphaeria maculans LEMA_P115290.1 N 0.000
COCVIDRAFT_37014 Bipolaris victoriae COCVIDRAFT_37014 N 0.000
PTT_02079 Pyrenophora teres PTT_02079 N 0.000
PV09_00811 Verruconis gallopava PV09_00811 N 0.000
COCSADRAFT_25239 Bipolaris sorokiniana COCSADRAFT_25239 N 0.000
SETTUDRAFT_174289 Setosphaeria turcica SETTUDRAFT_174289 N 0.000
COCMIDRAFT_8999 Bipolaris oryzae COCMIDRAFT_8999 N 0.000
UCRNP2_458 Neofusicoccum parvum UCRNP2_458 N 0.000
COCCADRAFT_82274 Bipolaris zeicola COCCADRAFT_82274 N 0.000
estExt_fgenesh1_pg.C_40234 Cochliobolus heterostrophus C5 estExt_fgenesh1_pg.C_40234 N 0.000
COCC4DRAFT_46985 Bipolaris maydis COCC4DRAFT_46985 N 0.000