MDP0000272542 (Malus domestica)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 MDP0000272542 T229052_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATH1
M10627_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATH1_01 		0.822 0.660
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.626 0.553
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.606 0.426
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.606 0.426
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.606 0.426
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.606 0.426
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000272542 Homeodomain 682 731

Links

Other Homeodomain family TFs
Other Malus domestica TFs

1011 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Mnt Mus musculus ENSMUSG00000000282 D
MNT Homo sapiens ENSG00000070444 D
MNT Procavia capensis ENSPCAG00000013160 I
ENSSTOG00000026802 Ictidomys tridecemlineatus ENSSTOG00000026802 I
Mnt Rattus norvegicus ENSRNOG00000002894 I
ENSPVAG00000002166 Pteropus vampyrus ENSPVAG00000002166 I
MNT Pan troglodytes ENSPTRG00000008549 I
ENSPSIG00000013581 Pelodiscus sinensis ENSPSIG00000013581 I
ENSPFOG00000015158 Poecilia formosa ENSPFOG00000015158 I
ENSPFOG00000010412 Poecilia formosa ENSPFOG00000010412 I
MNT Taeniopygia guttata ENSTGUG00000008774 I
ENSPANG00000024466 Papio anubis ENSPANG00000024466 I
MNT Oryzias latipes ENSORLG00000007865 I
mntb Oryzias latipes ENSORLG00000002734 I
ENSONIG00000008731 Oreochromis niloticus ENSONIG00000008731 I
ENSONIG00000008133 Oreochromis niloticus ENSONIG00000008133 I
CpipJ_CPIJ015473 Culex pipiens CpipJ_CPIJ015473 I
MNT Oryctolagus cuniculus ENSOCUG00000016100 I
Afo_R013625 Aptenodytes forsteri Afo_R013625 I
mnt.L Xenopus laevis XB-GENE-6087152 I
LDEC010970 Leptinotarsa decemlineata LDEC010970 I
Sakowv30028253m.g Saccoglossus kowalevskii Sakowv30028253m.g I
Pvit_02549 Pogona vitticeps Pvit_02549 I
Ogr16275 Ophisaurus gracilis Ogr16275 I
Gfo_R012737 Geospiza fortis Gfo_R012737 I
ENSP00000384177-D1 Bos grunniens ENSP00000384177-D1 I
Brh_R005672 Buceros rhinoceros Brh_R005672 I
MNT Otolemur garnettii ENSOGAG00000004499 I
Aan_R004293 Calypte anna Aan_R004293 I
TC015361 Tribolium castaneum TC015361 I
SMAR003191 Strigamia maritima SMAR003191 I
ENSXMAG00000008629 Xiphophorus maculatus ENSXMAG00000008629 I
MNT Takifugu rubripes ENSTRUG00000015800 I
mntb Takifugu rubripes ENSTRUG00000011273 I
MNT Tetraodon nigroviridis ENSTNIG00000005816 I
MNT Danio rerio ENSDARG00000101859 I
AAEL006567 Aedes aegypti AAEL006567 I
CPIJ015473 Culex quinquefasciatus CPIJ015473 I
ENSAMEG00000007541 Ailuropoda melanoleuca ENSAMEG00000007541 I
ENSAMXG00000008763 Astyanax mexicanus ENSAMXG00000008763 I
ENSAMXG00000020050 Astyanax mexicanus ENSAMXG00000020050 I
ENSAPLG00000003927 Anas platyrhynchos ENSAPLG00000003927 I
MNT Bos taurus ENSBTAG00000025129 I
MNT Canis familiaris ENSCAFG00000019295 I
MNT Callithrix jacchus ENSCJAG00000012389 I
ENSCPOG00000014839 Cavia porcellus ENSCPOG00000014839 I
ENSCSAG00000013771 Chlorocebus sabaeus ENSCSAG00000013771 I
mntb Danio rerio ENSDARG00000073988 I
ENSOARG00000015698 Ovis aries ENSOARG00000015698 I
MNT Dasypus novemcinctus ENSDNOG00000040019 I
ENSFALG00000004754 Ficedula albicollis ENSFALG00000004754 I
MNT Gorilla gorilla ENSGGOG00000002455 I
MNT Macaca mulatta ENSMMUG00000022004 I
MNT Meleagris gallopavo ENSMGAG00000008592 I
ENSMEUG00000015884 Macropus eugenii ENSMEUG00000015884 I
ENSLOCG00000004411 Lepisosteus oculatus ENSLOCG00000004411 I
ENSLACG00000018117 Latimeria chalumnae ENSLACG00000018117 I
ENSGMOG00000011558 Gadus morhua ENSGMOG00000011558 I
MNT Felis catus ENSFCAG00000006315 I
ENSGMOG00000006979 Gadus morhua ENSGMOG00000006979 I
MNT Monodelphis domestica ENSMODG00000010713 I
MNT Gallus gallus ENSGALG00000005830 I
mntb Gasterosteus aculeatus ENSGACG00000020487 I
MNT Gasterosteus aculeatus ENSGACG00000008790 I
ENSMPUG00000012867 Mustela putorius furo ENSMPUG00000012867 I
YQE_11244 Dendroctonus ponderosae YQE_11244 N
BGIBMGA013173 Bombyx mori BGIBMGA013173 N
ACYPI007295 Acyrthosiphon pisum ACYPI007295 N
MCINX010388 Melitaea cinxia MCINX010388 N
L798_06616 Zootermopsis nevadensis L798_06616 N
HMEL003564 Heliconius melpomene HMEL003564 N
ENSSHAG00000011999 Sarcophilus harrisii ENSSHAG00000011999 N