MDP0000300503 (Malus domestica)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 MDP0000300503 T229064_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATH1
M10627_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATH1_01 		0.839 0.891
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.612 0.435
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.612 0.435
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.612 0.435
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.612 0.435
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.604 0.543
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000300503 Homeodomain 496 544

Links

Other Homeodomain family TFs
Other Malus domestica TFs

1001 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSTSYG00000003728 Tarsius syrichta ENSTSYG00000003728 I 0.000
RSKR_0001035725 Rhabditophanes kr3021 RSKR_0001035725 I 0.000
nRc.2.0.1.g34594 Romanomermis culicivorax nRc.2.0.1.g34594 I 0.000
MhA1_Contig168.frz3.gene54 Meloidogyne hapla MhA1_Contig168.frz3.gene54 I 0.000
HPBE_0000879501 Heligmosomoides bakeri HPBE_0000879501 I 0.000
Pvit_11713 Pogona vitticeps Pvit_11713 I 0.000
Ogr14605 Ophisaurus gracilis Ogr14605 I 0.000
Alligator_sinensis_CCG010654.1 Alligator sinensis Alligator_sinensis_CCG010654.1 I 0.000
ENSXMAG00000000423 Xiphophorus maculatus ENSXMAG00000000423 I 0.000
BGIBMGA008409 Bombyx mori BGIBMGA008409 I 0.000
ENSPSIG00000003143 Pelodiscus sinensis ENSPSIG00000003143 I 0.000
ENSNLEG00000005999 Nomascus leucogenys ENSNLEG00000005999 I 0.000
ENSMMUG00000032301 Macaca mulatta ENSMMUG00000032301 I 0.000
ENSMMUG00000030441 Macaca mulatta ENSMMUG00000030441 I 0.000
EVX2 Gallus gallus ENSGALG00000020768 I 0.000
ENSETEG00000007628 Echinops telfairi ENSETEG00000007628 I 0.000
EVX1 Dasypus novemcinctus ENSDNOG00000005246 I 0.000
ENSCPOG00000006711 Cavia porcellus ENSCPOG00000006711 I 0.000
ENSCHOG00000011497 Choloepus hoffmanni ENSCHOG00000011497 I 0.000
ENSACAG00000017916 Anolis carolinensis ENSACAG00000017916 I 0.000
CJA32075 Caenorhabditis japonica CJA32075 I 0.000
OBART09G17250 Oryza barthii OBART09G17250 N 0.000
OGLUM09G17780 Oryza glumaepatula OGLUM09G17780 N 0.000
ONIVA09G18260 Oryza nivara ONIVA09G18260 N 0.000
ORUFI09G18560 Oryza rufipogon ORUFI09G18560 N 0.000
BGIOSGA031128 Oryza indica BGIOSGA031128 N 0.000