MDP0000423445 (Malus domestica)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 MDP0000423445 T229080_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HAT22
M06926_2.00 		Arabidopsis thaliana
NNYAATCATT
AATGATTRNN		 Dap-seq
OMalley et al.(2016)
HAT22_col_a 		0.831 0.912
HAT2
M06929_2.00 		Arabidopsis thaliana
NHAATGATTRN
NYAATCATTDN		 Dap-seq
OMalley et al.(2016)
HAT2_colamp_a 		0.793 0.789
HAT2
M06930_2.00 		Arabidopsis thaliana
WNYAATCATWD
HWATGATTRNW		 Dap-seq
OMalley et al.(2016)
HAT2_col_v31 		0.793 0.789
HAT1
M02047_2.00 		Arabidopsis thaliana
NMATGATTRN
NYAATCATKN		 PBM
Weirauch et al.(2014)
pTH8107 		0.792 0.754
HAT1
M06922_2.00 		Arabidopsis thaliana
NHAATGATTRNNWDW
WHWNNYAATCATTDN		 Dap-seq
OMalley et al.(2016)
HAT1_col_a 		0.792 0.754
HAT1
M06923_2.00 		Arabidopsis thaliana
NYAATCATTDN
NHAATGATTRN		 Dap-seq
OMalley et al.(2016)
HAT1_colamp_a 		0.792 0.754
ATHB-X
M06902_2.00 		Arabidopsis thaliana
HHAATRATTRN
NYAATYATTDD		 Dap-seq
OMalley et al.(2016)
ATHB18_col_a 		0.778 0.754
ATHB-X
M06903_2.00 		Arabidopsis thaliana
NYAATGATTRV
BYAATCATTRN		 Dap-seq
OMalley et al.(2016)
ATHB18_colamp_a 		0.778 0.754
HAT3
M00728_2.00 		Arabidopsis thaliana
DTGATTRV
BYAATCAH		 PBM
Chang et al.(2013)
pTH7400 		0.764 0.825
ATHB-4
M01065_2.00 		Arabidopsis thaliana
NBMTGCATRNN
NNYATGCAKVN		 PBM
Sullivan et al.(2014)
pTH8184 		0.764 0.807
ATHB-4
M02042_2.00 		Arabidopsis thaliana
NNWTNATTRN
NYAATNAWNN		 PBM
Weirauch et al.(2014)
pTH8667 		0.764 0.807
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000423445 Homeodomain 143 199

Links

Other Homeodomain family TFs
Other Malus domestica TFs

694 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BZIP44 Arabidopsis thaliana AT1G75390 D 0.000
Thhalv10019604m.g Eutrema salsugineum Thhalv10019604m.g I 0.000
Bo2g083760 Brassica oleracea Bo2g083760 I 0.000
Bo6g086380 Brassica oleracea Bo6g086380 I 0.000
Bra003755 Brassica rapa Bra003755 I 0.000
Bostr.3288s0189 Boechera stricta Bostr.3288s0189 I 0.000
AtbZIP44 Arabidopsis lyrata scaffold_202483.1 I 0.000
MTR_1g022495 Medicago truncatula MTR_1g022495 I 0.000
ONIVA08G12360 Oryza nivara ONIVA08G12360 N 0.000
OBART08G12060 Oryza barthii OBART08G12060 N 0.000
OPUNC08G10970 Oryza punctata OPUNC08G10970 N 0.000
ORGLA08G0106400 Oryza glaberrima ORGLA08G0106400 N 0.000
ORUFI08G13590 Oryza rufipogon ORUFI08G13590 N 0.000
Sb02g020760 Sorghum bicolor Sb02g020760 N 0.000
Traes_5AL_D9A4DFF71 Triticum aestivum Traes_5AL_D9A4DFF71 N 0.000
Traes_5DL_67A38E9B7 Triticum aestivum Traes_5DL_67A38E9B7 N 0.000
TRIUR3_05083 Triticum urartu TRIUR3_05083 N 0.000
Pavir.Bb01636 Panicum virgatum Pavir.Bb01636 N 0.000
OMERI08G10040 Oryza meridionalis OMERI08G10040 N 0.000
OLONG_022621 Oryza longistaminata OLONG_022621 N 0.000
OGLUM08G12880 Oryza glumaepatula OGLUM08G12880 N 0.000
OB08G20490 Oryza brachyantha OB08G20490 N 0.000
MLOC_71104 Hordeum vulgare MLOC_71104 N 0.000
LPERR09G03320 Leersia perrieri LPERR09G03320 N 0.000
LPERR08G10100 Leersia perrieri LPERR08G10100 N 0.000
GRMZM2G092137 Zea mays GRMZM2G092137 N 0.000
GLYMA17G37180 Glycine max GLYMA17G37180 N 0.000
F775_14757 Aegilops tauschii F775_14757 N 0.000
BRADI4G27720 Brachypodium distachyon BRADI4G27720 N 0.000
BRADI3G22040 Brachypodium distachyon BRADI3G22040 N 0.000
BGIOSGA028522 Oryza indica BGIOSGA028522 N 0.000