Pavir.Ia01697 (Panicum virgatum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Pavir.Ia01697 T229294_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-9
M06898_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
PHV_col_a 		0.849 0.929
ATHB-9
M02682_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 SELEX
Mathelier et al.(2014)
MA0573.1 		0.849 0.929
ATHB-9
M10623_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 Transfac
Matys et al.(2006)
P$ATHB9_01 		0.849 0.929
ATHB-15
M00864_2.00 		Arabidopsis thaliana
AATAATTACT
AGTAATTATT		 PBM
Franco-Zorrilla et al.(2014)
ICU4 		0.844 0.893
ATHB-15
M06899_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
ATHB15_col_a 		0.844 0.893
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ia01697.1.p Homeodomain 26 85
Pavir.Ia01697.2.p Homeodomain 26 85

Links

Other Homeodomain family TFs
Other Panicum virgatum TFs

334 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ZNF821 Homo sapiens ENSG00000102984 D 0.000
ENSTSYG00000014686 Tarsius syrichta ENSTSYG00000014686 N 0.000
ZNF821 Ochotona princeps ENSOPRG00000001338 N 0.000
ENSPANG00000007150 Papio anubis ENSPANG00000007150 N 0.000
ENSPPYG00000007523 Pongo abelii ENSPPYG00000007523 N 0.000
ZNF821 Pan troglodytes ENSPTRG00000008328 N 0.000
ZNF821 Pteropus vampyrus ENSPVAG00000010249 N 0.000
Zfp821 Rattus norvegicus ENSRNOG00000000262 N 0.000
ZNF821 Sorex araneus ENSSARG00000006676 N 0.000
ENSSHAG00000017183 Sarcophilus harrisii ENSSHAG00000017183 N 0.000
ZNF821 Sus scrofa ENSSSCG00000002741 N 0.000
ENSSSCG00000021002 Sus scrofa ENSSSCG00000021002 N 0.000
ENSSTOG00000015313 Ictidomys tridecemlineatus ENSSTOG00000015313 N 0.000
ZNF821 Tupaia belangeri ENSTBEG00000011534 N 0.000
ZNF821 Oryctolagus cuniculus ENSOCUG00000009019 N 0.000
ZNF821 Tursiops truncatus ENSTTRG00000001899 N 0.000
ZNF821 Vicugna pacos ENSVPAG00000002914 N 0.000
Aan_R009152 Calypte anna Aan_R009152 N 0.000
Afo_R007427 Aptenodytes forsteri Afo_R007427 N 0.000
Alligator_sinensis_CCG000684.1 Alligator sinensis Alligator_sinensis_CCG000684.1 N 0.000
ENSP00000398089-D1 Bos grunniens ENSP00000398089-D1 N 0.000
ENSP00000398089 Macaca fascicularis ENSP00000398089 N 0.000
Myotis_brandtii_ZNF821_10022420 Myotis brandtii Myotis_brandtii_ZNF821_10022420 N 0.000
Ogr16857 Ophisaurus gracilis Ogr16857 N 0.000
Pvit_16264 Pogona vitticeps Pvit_16264 N 0.000
Tal_R008267 Tyto alba Tal_R008267 N 0.000
ENSLACG00000004968 Latimeria chalumnae ENSLACG00000004968 N 0.000
ENSAPLG00000015041 Anas platyrhynchos ENSAPLG00000015041 N 0.000
ZNF821 Bos taurus ENSBTAG00000021438 N 0.000
ZNF821 Canis familiaris ENSCAFG00000020210 N 0.000
ZNF821 Choloepus hoffmanni ENSCHOG00000000514 N 0.000
ZNF821 Cavia porcellus ENSCPOG00000005644 N 0.000
ENSCSAG00000004263 Chlorocebus sabaeus ENSCSAG00000004263 N 0.000
ZNF821 Dasypus novemcinctus ENSDNOG00000047259 N 0.000
ENSDORG00000002406 Dipodomys ordii ENSDORG00000002406 N 0.000
ZNF821 Equus caballus ENSECAG00000008472 N 0.000
ZNF821 Erinaceus europaeus ENSEEUG00000003059 N 0.000
ZNF821 Felis catus ENSFCAG00000011073 N 0.000
ZNF821 Gorilla gorilla ENSGGOG00000005863 N 0.000
ZNF821 Otolemur garnettii ENSOGAG00000007248 N 0.000
ZNF821 Loxodonta africana ENSLAFG00000016315 N 0.000
ENSMEUG00000004670 Macropus eugenii ENSMEUG00000004670 N 0.000
ZNF821 Myotis lucifugus ENSMLUG00000013825 N 0.000
ZNF821 Macaca mulatta ENSMMUG00000016716 N 0.000
ZNF821 Monodelphis domestica ENSMODG00000002425 N 0.000
ENSMPUG00000007877 Mustela putorius furo ENSMPUG00000007877 N 0.000
Zfp821 Mus musculus ENSMUSG00000031728 N 0.000
ENSNLEG00000005746 Nomascus leucogenys ENSNLEG00000005746 N 0.000
ZNF821 Ornithorhynchus anatinus ENSOANG00000008189 N 0.000
ENSOARG00000003811 Ovis aries ENSOARG00000003811 N 0.000
ENSAMEG00000002510 Ailuropoda melanoleuca ENSAMEG00000002510 N 0.000