Pavir.Ia04841 (Panicum virgatum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Pavir.Ia04841 T229302_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-15
M00864_2.00 		Arabidopsis thaliana
AATAATTACT
AGTAATTATT		 PBM
Franco-Zorrilla et al.(2014)
ICU4 		0.817 0.895
ATHB-15
M06899_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
ATHB15_col_a 		0.817 0.895
ATHB-9
M06898_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
PHV_col_a 		0.812 0.842
ATHB-9
M02682_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 SELEX
Mathelier et al.(2014)
MA0573.1 		0.812 0.842
ATHB-9
M10623_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 Transfac
Matys et al.(2006)
P$ATHB9_01 		0.812 0.842
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ia04841.1.p Homeodomain 25 85

Links

Other Homeodomain family TFs
Other Panicum virgatum TFs

333 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
NAC047 Arabidopsis thaliana AT3G04070 D
NAC025 Arabidopsis thaliana AT1G61110 D
Traes_2DS_5DF921ABB Triticum aestivum Traes_2DS_5DF921ABB I
LjSGA_023894.2 Lotus japonicus LjSGA_023894.2 I
TRAES3BF108700110CFD_g Triticum aestivum TRAES3BF108700110CFD_g I
Traes_6AS_6F89CC969 Triticum aestivum Traes_6AS_6F89CC969 I
Traes_6DS_90A627C3F Triticum aestivum Traes_6DS_90A627C3F I
anac047 Vitis vinifera VIT_08s0007g07670 I
Cla023771 Citrullus lanatus Cla023771 I
Pm011604 Prunus mume Pm011604 I
Pm025312 Prunus mume Pm025312 I
cassava26728.m1 Manihot esculenta cassava26728.m1 I
Cucsa.341790 Cucumis sativus Cucsa.341790 I
Bostr.10040s0089 Boechera stricta Bostr.10040s0089 I
Cagra.2213s0001 Capsella grandiflora Cagra.2213s0001 I
Carubv10021371m.g Capsella rubella Carubv10021371m.g I
Ciclev10020717m.g Citrus clementina Ciclev10020717m.g I
Eucgr.A02070 Eucalyptus grandis Eucgr.A02070 I
Lus10006547.g Linum usitatissimum Lus10006547.g I
MDP0000180683 Malus domestica MDP0000180683 I
MDP0000404409 Malus domestica MDP0000404409 I
orange1.1g017665m.g Citrus sinensis orange1.1g017665m.g I
Thhalv10023591m.g Eutrema salsugineum Thhalv10023591m.g I
PK08629.1 Cannabis sativa PK08629.1 I
chr1.CM0104.240.nc Lotus japonicus chr1.CM0104.240.nc I
GLYMA19G28476 Glycine max GLYMA19G28476 I
Bo01282s010 Brassica oleracea Bo01282s010 I
Bo1g152220 Brassica oleracea Bo1g152220 I
Bra001597 Brassica rapa Bra001597 I
Bra027101 Brassica rapa Bra027101 I
Bra031949 Brassica rapa Bra031949 I
Bra040152 Brassica rapa Bra040152 I
F775_14365 Aegilops tauschii F775_14365 I
F775_16000 Aegilops tauschii F775_16000 I
anac025 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000277 I
GLYMA16G04740 Glycine max GLYMA16G04740 I
GLYMA16G26740 Glycine max GLYMA16G26740 I
Traes_2BS_58AA829F4 Triticum aestivum Traes_2BS_58AA829F4 I
MLOC_8116 Hordeum vulgare MLOC_8116 I
PGSC0003DMG400019293 Solanum tuberosum PGSC0003DMG400019293 I
POPTR_0011s04650 Populus trichocarpa POPTR_0011s04650 I
PRUPE_ppa007445mg Prunus persica PRUPE_ppa007445mg I
PRUPE_ppa007577mg Prunus persica PRUPE_ppa007577mg I
Solyc07g063420.2 Solanum lycopersicum Solyc07g063420.2 I
Traes_2AS_09457EDD8 Triticum aestivum Traes_2AS_09457EDD8 I
GRMZM2G312201 Zea mays GRMZM2G312201 N
MTR_7g085220 Medicago truncatula MTR_7g085220 N
Pm030099 Prunus mume Pm030099 N
MDP0000802924 Malus domestica MDP0000802924 N
Ca_08257 Cicer arietinum Ca_08257 N
PK06287.1 Cannabis sativa PK06287.1 N
PRUPE_ppa015363mg Prunus persica PRUPE_ppa015363mg N