CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Pavir.Ia04906 *(Panicum virgatum)* Homeodomain
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00046 (Homeobox)	IPR001356	Pavir.Ia04906	T229303_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
estExt_gwp_gw1.C_70211 M02220_2.00	Physcomitrella patens	HMATNANDNN	NNHNTNATKD	PBM Weirauch et al.(2014) pTH8489	0.842	0.750
ATHB-13 M06900_2.00	Arabidopsis thaliana	HYAATAATTDD	HHAATTATTRD	Dap-seq OMalley et al.(2016) ATHB13_col_a	0.822	0.696
ATHB-13 M06901_2.00	Arabidopsis thaliana	NYAATAATTRW	WYAATTATTRN	Dap-seq OMalley et al.(2016) ATHB13_colamp_a	0.822	0.696
HAT5 M06914_2.00	Arabidopsis thaliana	NHAATAATTDW	WHAATTATTDN	Dap-seq OMalley et al.(2016) HAT5_col_a	0.813	0.732
HAT5 M06915_2.00	Arabidopsis thaliana	WNYAATAATTRWDN	NHWYAATTATTRNW	Dap-seq OMalley et al.(2016) HAT5_colamp_a	0.813	0.732
HAT5 M02683_2.00	Arabidopsis thaliana	SCAATAATTNNV	BNNAATTATTGS	SELEX Mathelier et al.(2014) MA0008.2	0.813	0.732
HAT5 M10624_2.00	Arabidopsis thaliana	YSCAATAATTNNVN	NBNNAATTATTGSR	Transfac Matys et al.(2006) P$ATHB1_01	0.813	0.732
ATHB-16 M02050_2.00	Arabidopsis thaliana	YAATMATT	AATKATTR	PBM Weirauch et al.(2014) pTH7270	0.809	0.750
ATHB-6 M02040_2.00	Arabidopsis thaliana	HATNATTDN	NHAATNATD	PBM Weirauch et al.(2014) pTH7670	0.809	0.732
ATHB-6 M06909_2.00	Arabidopsis thaliana	NNNHATKATTR	YAATMATDNNN	Dap-seq OMalley et al.(2016) ATHB6_col_a	0.809	0.732
ATHB-6 M06910_2.00	Arabidopsis thaliana	NCAATAATTRN	NYAATTATTGN	Dap-seq OMalley et al.(2016) ATHB6_colamp_a	0.809	0.732
ATHB-5 M06932_2.00	Arabidopsis thaliana	NYAATMATTND	HNAATKATTRN	Dap-seq OMalley et al.(2016) ATHB5_col_a	0.791	0.732
ATHB-5 M06933_2.00	Arabidopsis thaliana	NYAATMATTN	NAATKATTRN	Dap-seq OMalley et al.(2016) ATHB5_colamp_a	0.791	0.732
ATHB-5 M02684_2.00	Arabidopsis thaliana	CAATVATTGVVSV	BSBBCAATBATTG	SELEX Mathelier et al.(2014) MA0110.2	0.791	0.732
ATHB-5 M10630_2.00	Arabidopsis thaliana	CAATVATTG	CAATBATTG	Transfac Matys et al.(2006) P$ATHB5_01	0.791	0.732
ATHB-53 M06934_2.00	Arabidopsis thaliana	HMAATAATTRD	HYAATTATTKD	Dap-seq OMalley et al.(2016) ATHB53_col_a	0.754	0.589
ATHB-53 M06935_2.00	Arabidopsis thaliana	NNWHCAATWATTDDN	NHHAATWATTGDWNN	Dap-seq OMalley et al.(2016) ATHB53_colamp_a	0.754	0.589
ATHB-21 M06907_2.00	Arabidopsis thaliana	NNWHCAATWATTDN	NHAATWATTGDWNN	Dap-seq OMalley et al.(2016) ATHB21_col_a	0.751	0.643
ATHB-21 M06908_2.00	Arabidopsis thaliana	WWDDNNNHAATWATTGDTNN	NNAHCAATWATTDNNNHHWW	Dap-seq OMalley et al.(2016) ATHB21_colamp_a	0.751	0.643
HB-5 M06924_2.00	Arabidopsis thaliana	NNAHCAATWATTKDNNNHWWH	DWWDNNNHMAATWATTGDTNN	Dap-seq OMalley et al.(2016) ATHB40_col_a	0.749	0.589
HB-5 M06925_2.00	Arabidopsis thaliana	HHAATWATTGDWNN	NNWHCAATWATTDD	Dap-seq OMalley et al.(2016) ATHB40_colamp_a	0.749	0.589
PK20392.1 M01250_2.00	Cannabis sativa	NHAATMATDN	NHATKATTDN	PBM Lambert et al.(2019) pTH11331	0.684	0.679
PK20392.1 M01251_2.00	Cannabis sativa	NHAATMATDN	NHATKATTDN	PBM Lambert et al.(2019) pTH11332	0.684	0.679
ATHB-20 M06912_2.00	Arabidopsis thaliana	HYAATAATTRD	HYAATTATTRD	Dap-seq OMalley et al.(2016) ATHB20_col_a	0.664	0.661
ATHB-20 M06913_2.00	Arabidopsis thaliana	HYAATMATTRD	HYAATKATTRD	Dap-seq OMalley et al.(2016) ATHB20_colamp_a	0.664	0.661
For this family, TFs with SR scores > 0.599* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Pavir.Ia04906.1.p	Homeodomain	65	120	EKKRRLAADQVRALERCFETDNKLDPDRKSRIARDLGLQPRQVAVWFQNRRARWKT

Links
Other Homeodomain family TFs
Other *Panicum virgatum* TFs

802 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
MYCFIDRAFT_127068	Pseudocercospora fijiensis	MYCFIDRAFT_127068	I	0.000
estExt_Genewise1.C_12176	Mycosphaerella fijiensis	estExt_Genewise1.C_12176	I	0.000
estExt_fgenesh1_pg.C_chr_10960	Mycosphaerella graminicola	estExt_fgenesh1_pg.C_chr_10960	I	0.000
V499_05963	Pseudogymnoascus pannorum	V499_05963	I	0.000
THITE_2108095	Thielavia terrestris	THITE_2108095	I	0.000
SEPMUDRAFT_146091	Sphaerulina musiva	SEPMUDRAFT_146091	I	0.000
PODANS_2_4060	Podospora anserina	PODANS_2_4060	I	0.000
MYCTH_2301920	Myceliophthora thermophila	MYCTH_2301920	I	0.000
Mycgr3G107320	Zymoseptoria tritici	Mycgr3G107320	I	0.000
AUEXF2481DRAFT_374368	Aureobasidium subglaciale	AUEXF2481DRAFT_374368	I	0.000
M438DRAFT_155623	Aureobasidium pullulans	M438DRAFT_155623	I	0.000
M437DRAFT_67933	Aureobasidium melanogenum	M437DRAFT_67933	I	0.000
GMDG_01905	Pseudogymnoascus destructans	GMDG_01905	I	0.000
DOTSEDRAFT_68376	Dothistroma septosporum	DOTSEDRAFT_68376	I	0.000
CHGG_07364	Chaetomium globosum	CHGG_07364	I	0.000
MPH_08875	Macrophomina phaseolina	MPH_08875	N	0.000
LEMA_P115290.1	Leptosphaeria maculans	LEMA_P115290.1	N	0.000
COCVIDRAFT_37014	Bipolaris victoriae	COCVIDRAFT_37014	N	0.000
PTT_02079	Pyrenophora teres	PTT_02079	N	0.000
PV09_00811	Verruconis gallopava	PV09_00811	N	0.000
COCSADRAFT_25239	Bipolaris sorokiniana	COCSADRAFT_25239	N	0.000
SETTUDRAFT_174289	Setosphaeria turcica	SETTUDRAFT_174289	N	0.000
COCMIDRAFT_8999	Bipolaris oryzae	COCMIDRAFT_8999	N	0.000
UCRNP2_458	Neofusicoccum parvum	UCRNP2_458	N	0.000
COCCADRAFT_82274	Bipolaris zeicola	COCCADRAFT_82274	N	0.000
estExt_fgenesh1_pg.C_40234	Cochliobolus heterostrophus C5	estExt_fgenesh1_pg.C_40234	N	0.000
COCC4DRAFT_46985	Bipolaris maydis	COCC4DRAFT_46985	N	0.000

Pavir.Ia04906 (Panicum virgatum) Homeodomain

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

802 Related TFs

Pavir.Ia04906 **(Panicum virgatum)
Homeodomain**