SapurV1A.0088s0320 (Salix purpurea)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 SapurV1A.0088s0320 T229418_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
KNAT7
M01064_2.00 		Arabidopsis thaliana
TGACRKST
ASMYGTCA		 PBM
Sullivan et al.(2014)
pTH9798 		0.717 0.683
KNAT4
M01238_2.00 		Arabidopsis thaliana
NNGACNNNN
NNNNGTCNN		 PBM
Lambert et al.(2019)
pTH9968 		0.713 0.634
KNAT3
M02051_2.00 		Arabidopsis thaliana
NNNGACVBNN
NNVBGTCNNN		 PBM
Weirauch et al.(2014)
pTH7600 		0.713 0.634
HOS66
M02156_2.00 		Oryza sativa
NNNNDHNN
NNDHNNNN		 PBM
Weirauch et al.(2014)
pTH8332 		0.700 0.659
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.689 0.439
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.689 0.439
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.689 0.439
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.689 0.439
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.627 0.439
PK25034.1
M01254_2.00 		Cannabis sativa
NNTGACRKBN
NVMYGTCANN		 PBM
Lambert et al.(2019)
pTH11259 		0.620 0.732
ATH1
M10627_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATH1_01 		0.612 0.488
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SapurV1A.0088s0320.1.p Homeodomain 253 293
SapurV1A.0088s0320.2.p Homeodomain 247 287

Links

Other Homeodomain family TFs
Other Salix purpurea TFs

1234 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava46929.m1 Manihot esculenta cassava46929.m1 N 0.000
SapurV1A.0423s0120 Salix purpurea SapurV1A.0423s0120 N 0.000
orange1.1g038084m.g Citrus sinensis orange1.1g038084m.g N 0.000
orange1.1g037241m.g Citrus sinensis orange1.1g037241m.g N 0.000
MDP0000713910 Malus domestica MDP0000713910 N 0.000
Gorai.013G045100 Gossypium raimondii Gorai.013G045100 N 0.000
Gorai.002G135000 Gossypium raimondii Gorai.002G135000 N 0.000
Eucgr.G01493 Eucalyptus grandis Eucgr.G01493 N 0.000
Ciclev10030106m.g Citrus clementina Ciclev10030106m.g N 0.000
Ciclev10003973m.g Citrus clementina Ciclev10003973m.g N 0.000
mgf020647m Mimulus guttatus mgf020647m N 0.000
cassava9129.m1 Manihot esculenta cassava9129.m1 N 0.000
cassava47360.m1 Manihot esculenta cassava47360.m1 N 0.000
GLYMA02G11500 Glycine max GLYMA02G11500 N 0.000
29801.m003163 Ricinus communis 29801.m003163 N 0.000
Pm021290 Prunus mume Pm021290 N 0.000
Cla016266 Citrullus lanatus Cla016266 N 0.000
Ca_16375 Cicer arietinum Ca_16375 N 0.000
VIT_18s0001g10300 Vitis vinifera VIT_18s0001g10300 N 0.000
RGE1 Vitis vinifera VIT_03s0063g00170 N 0.000
TCM_033803 Theobroma cacao TCM_033803 N 0.000
TCM_007083 Theobroma cacao TCM_007083 N 0.000
PRUPE_ppa022683mg Prunus persica PRUPE_ppa022683mg N 0.000
POPTR_0014s02600 Populus trichocarpa POPTR_0014s02600 N 0.000
GSMUA_Achr9G08780_001 Musa acuminata GSMUA_Achr9G08780_001 N 0.000