Thhalv10016241m.g (Eutrema salsugineum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Thhalv10016241m.g T229574_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-9
M06898_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
PHV_col_a 		0.866 0.964
ATHB-9
M02682_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 SELEX
Mathelier et al.(2014)
MA0573.1 		0.866 0.964
ATHB-9
M10623_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 Transfac
Matys et al.(2006)
P$ATHB9_01 		0.866 0.964
ATHB-15
M00864_2.00 		Arabidopsis thaliana
AATAATTACT
AGTAATTATT		 PBM
Franco-Zorrilla et al.(2014)
ICU4 		0.861 0.929
ATHB-15
M06899_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
ATHB15_col_a 		0.861 0.929
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10016241m Homeodomain 18 77

Links

Other Homeodomain family TFs
Other Eutrema salsugineum TFs

335 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TIGD6 Monodelphis domestica ENSMODG00000009805 D
ENSP00000296736 Macaca fascicularis ENSP00000296736 I
ENSAMEG00000020121 Ailuropoda melanoleuca ENSAMEG00000020121 I
ENSVPAG00000006121 Vicugna pacos ENSVPAG00000006121 I
ENSSTOG00000008758 Ictidomys tridecemlineatus ENSSTOG00000008758 I
ENSSHAG00000016809 Sarcophilus harrisii ENSSHAG00000016809 I
TIGD6 Pan troglodytes ENSPTRG00000017407 I
TIGD6 Procavia capensis ENSPCAG00000016618 I
ENSPANG00000023729 Papio anubis ENSPANG00000023729 I
ENSMPUG00000019320 Mustela putorius furo ENSMPUG00000019320 I
TIGD6 Microcebus murinus ENSMICG00000002736 I
TIGD6 Gorilla gorilla ENSGGOG00000008920 I
TIGD6 Homo sapiens ENSG00000164296 I
TIGD6 Felis catus ENSFCAG00000024582 I
TIGD6 Equus caballus ENSECAG00000004664 I
ENSCSAG00000019718 Chlorocebus sabaeus ENSCSAG00000019718 I
TIGD6 Canis familiaris ENSCAFG00000018238 I