Thhalv10024403m.g (Eutrema salsugineum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Thhalv10024403m.g T229601_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-15
M00864_2.00 		Arabidopsis thaliana
AATAATTACT
AGTAATTATT		 PBM
Franco-Zorrilla et al.(2014)
ICU4 		0.866 0.964
ATHB-15
M06899_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
ATHB15_col_a 		0.866 0.964
ATHB-9
M06898_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
PHV_col_a 		0.861 0.911
ATHB-9
M02682_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 SELEX
Mathelier et al.(2014)
MA0573.1 		0.861 0.911
ATHB-9
M10623_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 Transfac
Matys et al.(2006)
P$ATHB9_01 		0.861 0.911
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10024403m Homeodomain 14 73
Thhalv10024404m Homeodomain 14 73
Thhalv10024405m Homeodomain 14 73

Links

Other Homeodomain family TFs
Other Eutrema salsugineum TFs

336 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL009212 Aedes aegypti AAEL009212 I
LCUP002984 Lucilia cuprina LCUP002984 I
ACUA012769 Anopheles culicifacies ACUA012769 I
AFUN006040 Anopheles funestus AFUN006040 I
AMAM018999 Anopheles maculatus AMAM018999 I
MDOA000529 Musca domestica MDOA000529 I
AGAP005245 Anopheles gambiae AGAP005245 N
AATE005909 Anopheles atroparvus AATE005909 N
AFAF004960 Anopheles farauti AFAF004960 N
AMEC007159 Anopheles melas AMEC007159 N