LCUP005858 (Lucilia cuprina)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 LCUP005858 T229911_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VSX1
M03087_2.00 		Homo sapiens
YTAATTAN
NTAATTAR		 SELEX
Jolma et al.(2013)
VSX1_1 		0.827 0.652
VSX1
M03088_2.00 		Homo sapiens
NNYAATTRRBN
NVYYAATTRNN		 SELEX
Jolma et al.(2013)
VSX1_2 		0.827 0.652
VSX1
M04941_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX 		0.827 0.652
VSX1
M04944_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX 		0.827 0.652
VSX1
M05869_2.00 		Homo sapiens
DGCTAATTAN
NTAATTAGCH		 SMiLE-seq
Isakova et al.(2017)
VSX1 		0.827 0.652
VSX1
M04942_2.00 		Homo sapiens
NTAAYGMN
NKCRTTAN		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1 		0.827 0.652
VSX1
M04943_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2 		0.827 0.652
VSX1
M04945_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1 		0.827 0.652
VSX1
M04946_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2 		0.827 0.652
VAX1
M03168_2.00 		Homo sapiens
YTAATKAN
NTMATTAR		 SELEX
Jolma et al.(2013)
VAX1_1 		0.720 0.391
VAX1
M05182_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX 		0.720 0.391
VAX1
M05183_2.00 		Homo sapiens
BTMATKRN
NYMATKAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX 		0.720 0.391
Rx
M03840_2.00 		Drosophila melanogaster
BTAATTRV
BYAATTAV		 SELEX
Nitta et al.(2015)
Rx_1 		0.377 1.000
Rx
M03841_2.00 		Drosophila melanogaster
NTAATBNSATTAN
NTAATSNVATTAN		 SELEX
Nitta et al.(2015)
Rx_2 		0.377 1.000
Rx
M06520_2.00 		Drosophila melanogaster
YTAATTR
YAATTAR		 B1H
Mathelier et al.(2014)
MA0202.1 		0.377 1.000
Rx
M06317_2.00 		Drosophila melanogaster
VYTAATTR
YAATTARB		 B1H
Zhu et al.(2011)
Rx_Cell_FBgn0020617 		0.377 1.000
Rx
M06318_2.00 		Drosophila melanogaster
HTAATTR
YAATTAD		 B1H
Zhu et al.(2011)
Rx_SOLEXA_FBgn0020617 		0.377 1.000
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LCUP005858-PA Homeodomain 630 675

Links

Other Homeodomain family TFs
Other Lucilia cuprina TFs

1307 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ciclev10002005m.g Citrus clementina Ciclev10002005m.g N 0.000
Traes_7AL_25850F96F Triticum aestivum Traes_7AL_25850F96F N 0.000
Traes_7DL_3CE000E38 Triticum aestivum Traes_7DL_3CE000E38 N 0.000
TRIUR3_33804 Triticum urartu TRIUR3_33804 N 0.000
Ca_20172 Cicer arietinum Ca_20172 N 0.000
Cla023847 Citrullus lanatus Cla023847 N 0.000
30170.m014243 Ricinus communis 30170.m014243 N 0.000
Cucsa.272470 Cucumis sativus Cucsa.272470 N 0.000
mgf016987m Mimulus guttatus mgf016987m N 0.000
mgf025972m Mimulus guttatus mgf025972m N 0.000
Aquca_095_00028 Aquilegia coerulea Aquca_095_00028 N 0.000
TCM_034804 Theobroma cacao TCM_034804 N 0.000
evm.TU.contig_24967.6 Carica papaya evm.TU.contig_24967.6 N 0.000
evm.TU.supercontig_438.4 Carica papaya evm.TU.supercontig_438.4 N 0.000
Gorai.009G309200 Gossypium raimondii Gorai.009G309200 N 0.000
Lus10040069.g Linum usitatissimum Lus10040069.g N 0.000
orange1.1g022379m.g Citrus sinensis orange1.1g022379m.g N 0.000
Pavir.Da00593 Panicum virgatum Pavir.Da00593 N 0.000
Pavir.Db00825 Panicum virgatum Pavir.Db00825 N 0.000
PK05989.1 Cannabis sativa PK05989.1 N 0.000
LjSGA_008446.2 Lotus japonicus LjSGA_008446.2 N 0.000
OBART06G21250 Oryza barthii OBART06G21250 N 0.000
BRADI1G35790 Brachypodium distachyon BRADI1G35790 N 0.000
F775_26495 Aegilops tauschii F775_26495 N 0.000
GLYMA02G19754 Glycine max GLYMA02G19754 N 0.000
GRMZM2G025812 Zea mays GRMZM2G025812 N 0.000
GSMUA_Achr1G19750_001 Musa acuminata GSMUA_Achr1G19750_001 N 0.000
LPERR06G17810 Leersia perrieri LPERR06G17810 N 0.000
MLOC_22013 Hordeum vulgare MLOC_22013 N 0.000
MTR_1g050502 Medicago truncatula MTR_1g050502 N 0.000
OB06G29280 Oryza brachyantha OB06G29280 N 0.000
BGIOSGA023284 Oryza indica BGIOSGA023284 N 0.000
OGLUM06G22450 Oryza glumaepatula OGLUM06G22450 N 0.000
ONIVA06G25200 Oryza nivara ONIVA06G25200 N 0.000
OPUNC06G19380 Oryza punctata OPUNC06G19380 N 0.000
ORUFI06G22890 Oryza rufipogon ORUFI06G22890 N 0.000
BZIP50 Oryza sativa OS06G0622700 N 0.000
Sb04g006400 Sorghum bicolor Sb04g006400 N 0.000
Sb10g024430 Sorghum bicolor Sb10g024430 N 0.000
Si006978m.g Setaria italica Si006978m.g N 0.000
Si017847m.g Setaria italica Si017847m.g N 0.000