23789_YCR096C (Saccharomyces paradoxus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 23789_YCR096C T230781_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMLALPHA2
M00915_2.00 		Saccharomyces cerevisiae
NNDACRHN
NDYGTHNN		 PBM
Gordan et al.(2011)
Hmlalpha2 		0.867 1.000
MATALPHA2
M01550_2.00 		Saccharomyces cerevisiae
NDNACAAT
ATTGTNHN		 PBM
Zhu et al.(2009)
Matalpha2 		0.867 1.000
HMRA2
M00055_2.00 		Saccharomyces cerevisiae
CRTGTAAW
WTTACAYG		 PBM
Badis et al.(2008)
HMRA2_2071 		0.867 1.000
HMRA2
M07484_2.00 		Saccharomyces cerevisiae
YRTGTAAW
WTTACAYR		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0318.1 		0.867 1.000
MATALPHA2
M08570_2.00 		Saccharomyces cerevisiae
ACAYGH
DCRTGT		 Misc
DeBoer et al.(2011)
YCR039C_1364 		0.867 1.000
HMRA2
M08571_2.00 		Saccharomyces cerevisiae
YRTGTAAW
WTTACAYR		 Misc
DeBoer et al.(2011)
YCR096C_558 		0.867 1.000
MATALPHA2
M10791_2.00 		Saccharomyces cerevisiae
DWNNACAYGN
NCRTGTNNWH		 Transfac
Matys et al.(2006)
F$MATALPHA2_01 		0.867 1.000
MATALPHA2
M10792_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MATALPHA2_08 		0.867 1.000
MATALPHA2
M10793_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MATALPHA2P_Q4 		0.867 1.000
MATALPHA2
M10794_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MATALPHA2_Q4 		0.867 1.000
MATALPHA2
M02189_2.00 		Saccharomyces cerevisiae
NNNDCDNN
NNHGHNNN		 PBM
Weirauch et al.(2014)
pTH6506 		0.834 0.982
MTAL2_KLUDE
M02197_2.00 		Kluyveromyces delphensis
CRTGTAWW
WWTACAYG		 PBM
Weirauch et al.(2014)
pTH5974 		0.736 0.679
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
23789_YCR096C Homeodomain 40 98

Links

Other Homeodomain family TFs
Other Saccharomyces paradoxus TFs

24 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMXG00000024801 Astyanax mexicanus ENSAMXG00000024801 N
ENSAMXG00000024802 Astyanax mexicanus ENSAMXG00000024802 N
her4.4 Danio rerio ENSDARG00000009822 N
her4.2 Danio rerio ENSDARG00000056729 N
her4.1 Danio rerio ENSDARG00000056732 N
her4.3 Danio rerio ENSDARG00000070770 N
her4.2 Danio rerio ENSDARG00000094426 N
AAI57610 Xenopus tropicalis AAI57610 N