PDK_20s1343321g001 (Phoenix dactylifera)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 PDK_20s1343321g001 T231002_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-13
M06900_2.00 		Arabidopsis thaliana
HYAATAATTDD
HHAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB13_col_a 		0.857 0.929
ATHB-13
M06901_2.00 		Arabidopsis thaliana
NYAATAATTRW
WYAATTATTRN		 Dap-seq
OMalley et al.(2016)
ATHB13_colamp_a 		0.857 0.929
estExt_gwp_gw1.C_70211
M02220_2.00 		Physcomitrella patens
HMATNANDNN
NNHNTNATKD		 PBM
Weirauch et al.(2014)
pTH8489 		0.833 0.857
ATHB-5
M06932_2.00 		Arabidopsis thaliana
NYAATMATTND
HNAATKATTRN		 Dap-seq
OMalley et al.(2016)
ATHB5_col_a 		0.813 0.786
ATHB-5
M06933_2.00 		Arabidopsis thaliana
NYAATMATTN
NAATKATTRN		 Dap-seq
OMalley et al.(2016)
ATHB5_colamp_a 		0.813 0.786
ATHB-5
M02684_2.00 		Arabidopsis thaliana
CAATVATTGVVSV
BSBBCAATBATTG		 SELEX
Mathelier et al.(2014)
MA0110.2 		0.813 0.786
ATHB-5
M10630_2.00 		Arabidopsis thaliana
CAATVATTG
CAATBATTG		 Transfac
Matys et al.(2006)
P$ATHB5_01 		0.813 0.786
HAT5
M06914_2.00 		Arabidopsis thaliana
NHAATAATTDW
WHAATTATTDN		 Dap-seq
OMalley et al.(2016)
HAT5_col_a 		0.796 0.768
HAT5
M06915_2.00 		Arabidopsis thaliana
WNYAATAATTRWDN
NHWYAATTATTRNW		 Dap-seq
OMalley et al.(2016)
HAT5_colamp_a 		0.796 0.768
HAT5
M02683_2.00 		Arabidopsis thaliana
SCAATAATTNNV
BNNAATTATTGS		 SELEX
Mathelier et al.(2014)
MA0008.2 		0.796 0.768
HAT5
M10624_2.00 		Arabidopsis thaliana
YSCAATAATTNNVN
NBNNAATTATTGSR		 Transfac
Matys et al.(2006)
P$ATHB1_01 		0.796 0.768
ATHB-6
M02040_2.00 		Arabidopsis thaliana
HATNATTDN
NHAATNATD		 PBM
Weirauch et al.(2014)
pTH7670 		0.796 0.750
ATHB-16
M02050_2.00 		Arabidopsis thaliana
YAATMATT
AATKATTR		 PBM
Weirauch et al.(2014)
pTH7270 		0.796 0.750
ATHB-6
M06909_2.00 		Arabidopsis thaliana
NNNHATKATTR
YAATMATDNNN		 Dap-seq
OMalley et al.(2016)
ATHB6_col_a 		0.796 0.750
ATHB-6
M06910_2.00 		Arabidopsis thaliana
NCAATAATTRN
NYAATTATTGN		 Dap-seq
OMalley et al.(2016)
ATHB6_colamp_a 		0.796 0.750
ATHB-21
M06907_2.00 		Arabidopsis thaliana
NNWHCAATWATTDN
NHAATWATTGDWNN		 Dap-seq
OMalley et al.(2016)
ATHB21_col_a 		0.738 0.643
ATHB-21
M06908_2.00 		Arabidopsis thaliana
WWDDNNNHAATWATTGDTNN
NNAHCAATWATTDNNNHHWW		 Dap-seq
OMalley et al.(2016)
ATHB21_colamp_a 		0.738 0.643
HB-5
M06924_2.00 		Arabidopsis thaliana
NNAHCAATWATTKDNNNHWWH
DWWDNNNHMAATWATTGDTNN		 Dap-seq
OMalley et al.(2016)
ATHB40_col_a 		0.736 0.607
HB-5
M06925_2.00 		Arabidopsis thaliana
HHAATWATTGDWNN
NNWHCAATWATTDD		 Dap-seq
OMalley et al.(2016)
ATHB40_colamp_a 		0.736 0.607
ATHB-53
M06934_2.00 		Arabidopsis thaliana
HMAATAATTRD
HYAATTATTKD		 Dap-seq
OMalley et al.(2016)
ATHB53_col_a 		0.731 0.571
ATHB-53
M06935_2.00 		Arabidopsis thaliana
NNWHCAATWATTDDN
NHHAATWATTGDWNN		 Dap-seq
OMalley et al.(2016)
ATHB53_colamp_a 		0.731 0.571
PK20392.1
M01250_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11331 		0.727 0.893
PK20392.1
M01251_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11332 		0.727 0.893
ATHB-20
M06912_2.00 		Arabidopsis thaliana
HYAATAATTRD
HYAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_col_a 		0.702 0.821
ATHB-20
M06913_2.00 		Arabidopsis thaliana
HYAATMATTRD
HYAATKATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a 		0.702 0.821
ATHB-7
M02043_2.00 		Arabidopsis thaliana
NHWTGATTGN
NCAATCAWDN		 PBM
Weirauch et al.(2014)
pTH8090 		0.600 0.607
ATHB-7
M06911_2.00 		Arabidopsis thaliana
NHYCAATCATTSW
WSAATGATTGRDN		 Dap-seq
OMalley et al.(2016)
ATHB7_col_a 		0.600 0.607
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PDK_20s1343321g001 Homeodomain 33 88

Links

Other Homeodomain family TFs
Other Phoenix dactylifera TFs

819 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MAC_06906 Metarhizium acridum MAC_06906 N 0.000
fgenesh1_pg.sca_5_chr5_3_0000045 Nectria haematococca fgenesh1_pg.sca_5_chr5_3_0000045 N 0.000
X797_008065 Metarhizium robertsii X797_008065 N 0.000
VHEMI08725 Torrubiella hemipterigena VHEMI08725 N 0.000
VDBG_04268 Verticillium alfalfae VDBG_04268 N 0.000
VDAG_01498 Verticillium dahliae VDAG_01498 N 0.000
TRIVIDRAFT_211762 Trichoderma virens TRIVIDRAFT_211762 N 0.000
TRIREDRAFT_67209 Trichoderma reesei TRIREDRAFT_67209 N 0.000
TRIATDRAFT_292891 Trichoderma atroviride TRIATDRAFT_292891 N 0.000
NechaG80246 Fusarium solani NechaG80246 N 0.000
MGU_07007 Metarhizium guizhouense MGU_07007 N 0.000
MBR_08437 Metarhizium brunneum MBR_08437 N 0.000
MANI_011101 Metarhizium anisopliae MANI_011101 N 0.000
MAJ_07028 Metarhizium majus MAJ_07028 N 0.000
BBA_06158 Beauveria bassiana BBA_06158 N 0.000
GLRG_03524 Colletotrichum graminicola GLRG_03524 N 0.000
FVEG_02737 Fusarium verticillioides FVEG_02737 N 0.000
FPSE_03918 Fusarium pseudograminearum FPSE_03918 N 0.000
FOXG_05391 Fusarium oxysporum FOXG_05391 N 0.000
FGRRES_17302 Fusarium graminearum FGRRES_17302 N 0.000
FFUJ_07433 Fusarium fujikuroi FFUJ_07433 N 0.000
CSUB01_03246 Colletotrichum sublineola CSUB01_03246 N 0.000
CPUR_03067 Claviceps purpurea CPUR_03067 N 0.000
Cob_11006 Colletotrichum orbiculare Cob_11006 N 0.000
CH063_08290 Colletotrichum higginsianum CH063_08290 N 0.000
CGGC5_4581 Colletotrichum gloeosporioides CGGC5_4581 N 0.000
CFIO01_12131 Colletotrichum fioriniae CFIO01_12131 N 0.000
CCM_08431 Cordyceps militaris CCM_08431 N 0.000