D917_07736 (Trichinella nativa)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 D917_07736 T233506_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ara
M06518_2.00 		Drosophila melanogaster
WWACA
TGTWW		 B1H
Mathelier et al.(2014)
MA0210.1 		0.841 0.877
caup
M06519_2.00 		Drosophila melanogaster
WAACA
TGTTW		 B1H
Mathelier et al.(2014)
MA0217.1 		0.841 0.877
ara
M06313_2.00 		Drosophila melanogaster
TGTWWWNN
NNWWWACA		 B1H
Zhu et al.(2011)
Ara_Cell_FBgn0015904 		0.841 0.877
ara
M06314_2.00 		Drosophila melanogaster
DWWACA
TGTWWH		 B1H
Zhu et al.(2011)
Ara_SOLEXA_FBgn0015904 		0.841 0.877
caup
M06315_2.00 		Drosophila melanogaster
HWDWAACA
TGTTWHWD		 B1H
Zhu et al.(2011)
Caup_Cell_FBgn0015919 		0.841 0.877
caup
M06316_2.00 		Drosophila melanogaster
NDDACA
TGTHHN		 B1H
Zhu et al.(2011)
Caup_SOLEXA_FBgn0015919 		0.841 0.877
Irx6
M00456_2.00 		Mus musculus
NNDAHWN
NWDTHNN		 PBM
Berger et al.(2008)
Irx6_2623 		0.807 0.860
Irx2
M00386_2.00 		Mus musculus
NNDACAHNN
NNDTGTHNN		 PBM
Berger et al.(2008)
Irx2_0900 		0.802 0.825
Irx5
M00455_2.00 		Mus musculus
NNNDACAHN
NDTGTHNNN		 PBM
Berger et al.(2008)
Irx5_2385 		0.802 0.825
IRX2
M03212_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX2_1 		0.802 0.825
IRX5
M03222_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX5_1 		0.802 0.825
IRX5
M05315_2.00 		Homo sapiens
NBDTGTHNDACAYVN
NBRTGTHNDACAHVN		 SELEX
Yin et al.(2017)
IRX5_eDBD_HT-SELEX 		0.802 0.825
IRX5
M05316_2.00 		Homo sapiens
WYRYGHHNHAYRYRY
RYRYRTDNDDCRYRW		 SELEX
Yin et al.(2017)
IRX5_eDBD_Methyl-HT-SELEX 		0.802 0.825
Irx4
M00416_2.00 		Mus musculus
NNNDAMAH
DTKTHNNN		 PBM
Berger et al.(2008)
Irx4_2242 		0.788 0.842
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
D917_07736 Homeodomain 258 317

Links

Other Homeodomain family TFs
Other Trichinella nativa TFs

387 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ZNF7 Homo sapiens ENSG00000147789 D
ENSMPUG00000006051 Mustela putorius furo ENSMPUG00000006051 I
Myotis_brandtii_ZNF7_10006486 Myotis brandtii Myotis_brandtii_ZNF7_10006486 I
ENSP00000393260 Macaca fascicularis ENSP00000393260 I
ENSSTOG00000021142 Ictidomys tridecemlineatus ENSSTOG00000021142 I
ZNF7 Sorex araneus ENSSARG00000013435 I
LOC108348145 Rattus norvegicus ENSRNOG00000050695 I
Znf7 Rattus norvegicus ENSRNOG00000050497 I
ZNF7 Pteropus vampyrus ENSPVAG00000004291 I
ZNF7 Pan troglodytes ENSPTRG00000020717 I
ENSPPYG00000018994 Pongo abelii ENSPPYG00000018994 I
ENSPANG00000012142 Papio anubis ENSPANG00000012142 I
ZNF7 Oryctolagus cuniculus ENSOCUG00000022081 I
ZNF7 Canis familiaris ENSCAFG00000030492 I
ZNF7 Macaca mulatta ENSMMUG00000011550 I
ZNF7 Myotis lucifugus ENSMLUG00000016510 I
ZNF7 Microcebus murinus ENSMICG00000000042 I
ZNF7 Loxodonta africana ENSLAFG00000010535 I
ZNF7 Gorilla gorilla ENSGGOG00000008185 I
Zfp7 Dipodomys ordii ENSDORG00000011889 I
ZNF7 Dasypus novemcinctus ENSDNOG00000043881 I
ENSCSAG00000008197 Chlorocebus sabaeus ENSCSAG00000008197 I
ZNF7 Cavia porcellus ENSCPOG00000010429 I
ZNF7 Callithrix jacchus ENSCJAG00000021384 I