CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

EmuJ_000533000 *(Echinococcus multilocularis)* Homeodomain
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00046 (Homeobox)	IPR001356	EmuJ_000533000	T233899_2.00	WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Nkx2-2 M00438_2.00	Mus musculus	NNNRAGDRN	NYHCTYNNN	PBM Berger et al.(2008) Nkx2-2_2823	0.632	0.719
Nkx2-2 M09190_2.00	Mus musculus	NTBRAGWGBBN	NVVCWCTYVAN	Misc Kulakovskiy et al.(2013) NKX22_MOUSE.H11MO.0.A	0.632	0.719
NKX2-2 M10681_2.00	Homo sapiens	WTAAGTRBTT	AAVYACTTAW	Transfac Matys et al.(2006) V$NKX22_01	0.632	0.719
NKX2-2 M10682_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$NKX2B_Q3_01	0.632	0.719
NKX2-2 M10683_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$NKX2B_Q3	0.632	0.719
Nkx2-1 M00385_2.00	Mus musculus	NNRAGDRN	NYHCTYNN	PBM Berger et al.(2008) Titf1_1722	0.623	0.667
Nkx2-4 M00514_2.00	Mus musculus	NNRAGDRBNN	NNVYHCTYNN	PBM Berger et al.(2008) Nkx2-4_3074	0.623	0.667
NKX2-1 M09146_2.00	Homo sapiens	BTKGAGWGBN	NVCWCTCMAV	Misc Kulakovskiy et al.(2013) NKX21_HUMAN.H11MO.0.A	0.623	0.667
Nkx2-1 M09171_2.00	Mus musculus	NBTKGAGWGB	VCWCTCMAVN	Misc Kulakovskiy et al.(2013) NKX21_MOUSE.H11MO.0.A	0.623	0.667
Nkx2-1 M09563_2.00	Mus musculus	BTBRAGWGBH	DVCWCTYVAV	Misc Heinz et al.(2010) LungAC-Nkx2.1_GSE43252	0.623	0.667
NKX2-1 M10694_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$TITF1_Q3	0.623	0.667
NKX2-1 M10695_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$TTF1_Q5_01	0.623	0.667
NKX2-1 M10696_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$TTF1_Q5	0.623	0.667
NKX2-1 M10697_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$TTF1_Q6	0.623	0.667
vnd M06551_2.00	Drosophila melanogaster	WYTCAAGTR	YACTTGARW	B1H Mathelier et al.(2014) MA0253.1	0.616	0.702
vnd M06377_2.00	Drosophila melanogaster	WYTCAAGTR	YACTTGARW	B1H Zhu et al.(2011) Vnd_Cell_FBgn0003986	0.616	0.702
vnd M06378_2.00	Drosophila melanogaster	KYTSAAGWGY	RCWCTTSARM	B1H Zhu et al.(2011) vnd_FlyReg_FBgn0003986	0.616	0.702
vnd M06379_2.00	Drosophila melanogaster	BTBAAGTR	YACTTVAV	B1H Zhu et al.(2011) Vnd_SOLEXA_FBgn0003986	0.616	0.702
vnd M09683_2.00	Drosophila melanogaster	TCAAGTGB	VCACTTGA	Misc Kulakovskiy et al.(2009) vnd	0.616	0.702
scro M03854_2.00	Drosophila melanogaster	NNBRMGTGB	VCACKYVNN	SELEX Nitta et al.(2015) scro_1	0.611	0.667
NKX2-8 M00302_2.00	Homo sapiens	NNRAGDRB	VYHCTYNN	PBM Barrera et al.(2016) NKX2-8_REF	0.610	0.684
Nkx2-9 M00520_2.00	Mus musculus	NNNRAGDRBN	NVYHCTYNNN	PBM Berger et al.(2008) Nkx2-9_3082	0.610	0.684
Nkx2-9 M00800_2.00	Mus musculus	NNRAGDRBNN	NNVYHCTYNN	PBM Weirauch et al.(2013) pTH2842	0.610	0.684
NKX2-8 M05149_2.00	Homo sapiens	BTSRAGTGBN	NVCACTYSAV	SELEX Yin et al.(2017) NKX2-8_FL_HT-SELEX	0.610	0.684
NKX2-8 M09145_2.00	Homo sapiens	BTCAAGKRB	VYMCTTGAV	Misc Kulakovskiy et al.(2013) NKX28_HUMAN.H11MO.0.C	0.610	0.684
Nkx2-9 M09215_2.00	Mus musculus	BTCAAGKRB	VYMCTTGAV	Misc Kulakovskiy et al.(2013) NKX28_MOUSE.H11MO.0.C	0.610	0.684
NKX2-8 M00301_2.00	Homo sapiens	NNRAKDRB	VYHMTYNN	PBM Barrera et al.(2016) NKX2-8_A94T	0.610	0.684
NKX2-8 M05150_2.00	Homo sapiens	GCARTAACGACATC	GATGTCGTTAYTGC	SELEX Yin et al.(2017) NKX2-8_FL_Methyl-HT-SELEX_1	0.610	0.684
NKX2-8 M05151_2.00	Homo sapiens	BTSAAGTGBN	NVCACTTSAV	SELEX Yin et al.(2017) NKX2-8_FL_Methyl-HT-SELEX_2	0.610	0.684
NKX2-8 M05152_2.00	Homo sapiens	BTBAACGAB	VTCGTTVAV	SELEX Yin et al.(2017) NKX2-8_FL_Methyl-HT-SELEX_3	0.610	0.684
ceh-24 M02181_2.00	Caenorhabditis elegans	NNRAKWRNN	NNYWMTYNN	PBM Weirauch et al.(2014) pTH6327	0.607	0.649
For this family, TFs with SR scores > 0.599* will likely have a similar motif*