GPLIN_001192700 (Globodera pallida)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 GPLIN_001192700 T234064_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VSX1
M03087_2.00 		Homo sapiens
YTAATTAN
NTAATTAR		 SELEX
Jolma et al.(2013)
VSX1_1 		0.759 0.511
VSX1
M03088_2.00 		Homo sapiens
NNYAATTRRBN
NVYYAATTRNN		 SELEX
Jolma et al.(2013)
VSX1_2 		0.759 0.511
VSX1
M04941_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX 		0.759 0.511
VSX1
M04944_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX 		0.759 0.511
VSX1
M05869_2.00 		Homo sapiens
DGCTAATTAN
NTAATTAGCH		 SMiLE-seq
Isakova et al.(2017)
VSX1 		0.759 0.511
VSX1
M04942_2.00 		Homo sapiens
NTAAYGMN
NKCRTTAN		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1 		0.759 0.511
VSX1
M04943_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2 		0.759 0.511
VSX1
M04945_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1 		0.759 0.511
VSX1
M04946_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2 		0.759 0.511
VAX1
M03168_2.00 		Homo sapiens
YTAATKAN
NTMATTAR		 SELEX
Jolma et al.(2013)
VAX1_1 		0.722 0.400
VAX1
M05182_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX 		0.722 0.400
VAX1
M05183_2.00 		Homo sapiens
BTMATKRN
NYMATKAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX 		0.722 0.400
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GPLIN_001192700 Homeodomain 19 63

Links

Other Homeodomain family TFs
Other Globodera pallida TFs

1217 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ORUFI02G34150 Oryza rufipogon ORUFI02G34150 N 0.000
Pavir.Ab02943 Panicum virgatum Pavir.Ab02943 N 0.000
Pavir.Aa00475 Panicum virgatum Pavir.Aa00475 N 0.000
TRIUR3_24654 Triticum urartu TRIUR3_24654 N 0.000
Traes_6DL_2BAA4B7AA Triticum aestivum Traes_6DL_2BAA4B7AA N 0.000
Traes_6BL_340C2A897 Triticum aestivum Traes_6BL_340C2A897 N 0.000
Traes_6AL_CE4E76E1A Triticum aestivum Traes_6AL_CE4E76E1A N 0.000
Si017580m.g Setaria italica Si017580m.g N 0.000
Sb04g027940 Sorghum bicolor Sb04g027940 N 0.000
OS02G0747600 Oryza sativa OS02G0747600 N 0.000
BRADI3G59300 Brachypodium distachyon BRADI3G59300 N 0.000
ORGLA02G0280000 Oryza glaberrima ORGLA02G0280000 N 0.000
OPUNC02G30010 Oryza punctata OPUNC02G30010 N 0.000
OMERI02G31100 Oryza meridionalis OMERI02G31100 N 0.000
OBART02G32450 Oryza barthii OBART02G32450 N 0.000
OB02G39430 Oryza brachyantha OB02G39430 N 0.000
MLOC_76689 Hordeum vulgare MLOC_76689 N 0.000
GRMZM2G130459 Zea mays GRMZM2G130459 N 0.000
F775_28442 Aegilops tauschii F775_28442 N 0.000