HNAJ_0000526401 (Hymenolepis nana)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 HNAJ_0000526401 T234359_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Irx4
M00416_2.00 		Mus musculus
NNNDAMAH
DTKTHNNN		 PBM
Berger et al.(2008)
Irx4_2242 		0.781 0.679
Irx2
M00386_2.00 		Mus musculus
NNDACAHNN
NNDTGTHNN		 PBM
Berger et al.(2008)
Irx2_0900 		0.756 0.714
Irx5
M00455_2.00 		Mus musculus
NNNDACAHN
NDTGTHNNN		 PBM
Berger et al.(2008)
Irx5_2385 		0.756 0.714
IRX2
M03212_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX2_1 		0.756 0.714
IRX5
M03222_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX5_1 		0.756 0.714
IRX5
M05315_2.00 		Homo sapiens
NBDTGTHNDACAYVN
NBRTGTHNDACAHVN		 SELEX
Yin et al.(2017)
IRX5_eDBD_HT-SELEX 		0.756 0.714
IRX5
M05316_2.00 		Homo sapiens
WYRYGHHNHAYRYRY
RYRYRTDNDDCRYRW		 SELEX
Yin et al.(2017)
IRX5_eDBD_Methyl-HT-SELEX 		0.756 0.714
ara
M06518_2.00 		Drosophila melanogaster
WWACA
TGTWW		 B1H
Mathelier et al.(2014)
MA0210.1 		0.752 0.714
ara
M06313_2.00 		Drosophila melanogaster
TGTWWWNN
NNWWWACA		 B1H
Zhu et al.(2011)
Ara_Cell_FBgn0015904 		0.752 0.714
ara
M06314_2.00 		Drosophila melanogaster
DWWACA
TGTWWH		 B1H
Zhu et al.(2011)
Ara_SOLEXA_FBgn0015904 		0.752 0.714
Irx6
M00456_2.00 		Mus musculus
NNDAHWN
NWDTHNN		 PBM
Berger et al.(2008)
Irx6_2623 		0.750 0.661
caup
M06519_2.00 		Drosophila melanogaster
WAACA
TGTTW		 B1H
Mathelier et al.(2014)
MA0217.1 		0.743 0.661
caup
M06315_2.00 		Drosophila melanogaster
HWDWAACA
TGTTWHWD		 B1H
Zhu et al.(2011)
Caup_Cell_FBgn0015919 		0.743 0.661
caup
M06316_2.00 		Drosophila melanogaster
NDDACA
TGTHHN		 B1H
Zhu et al.(2011)
Caup_SOLEXA_FBgn0015919 		0.743 0.661
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
HNAJ_0000526401-mRNA-1 Homeodomain 307 365

Links

Other Homeodomain family TFs
Other Hymenolepis nana TFs

380 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava11642.m1 Manihot esculenta cassava11642.m1 I
ORGLA01G0219900 Oryza glaberrima ORGLA01G0219900 I
ORUFI01G29860 Oryza rufipogon ORUFI01G29860 I
Sb02g025350 Sorghum bicolor Sb02g025350 I
Sb09g027800 Sorghum bicolor Sb09g027800 I
Si022874m.g Setaria italica Si022874m.g I
Si030282m.g Setaria italica Si030282m.g I
TCM_037728 Theobroma cacao TCM_037728 I
Traes_5BL_C1D4586B1 Triticum aestivum Traes_5BL_C1D4586B1 I
VIT_11s0016g02780 Vitis vinifera VIT_11s0016g02780 I
BGIOSGA004221 Oryza indica BGIOSGA004221 I
mgf017404m Mimulus guttatus mgf017404m I
Aquca_001_00195 Aquilegia coerulea Aquca_001_00195 I
Ciclev10009336m.g Citrus clementina Ciclev10009336m.g I
orange1.1g037024m.g Citrus sinensis orange1.1g037024m.g I
Pavir.Aa03183 Panicum virgatum Pavir.Aa03183 I
Pavir.Bb02272 Panicum virgatum Pavir.Bb02272 I
Pavir.J11789 Panicum virgatum Pavir.J11789 I
Pavir.J15551 Panicum virgatum Pavir.J15551 I
AMTR_s00056p00204920 Amborella trichopoda AMTR_s00056p00204920 I
GRMZM2G115859 Zea mays GRMZM2G115859 I
LPERR05G20870 Leersia perrieri LPERR05G20870 I
GRMZM2G069325 Zea mays GRMZM2G069325 I
MLOC_5098 Hordeum vulgare MLOC_5098 I
F775_22184 Aegilops tauschii F775_22184 I
OBART01G26850 Oryza barthii OBART01G26850 I
OGLUM01G30780 Oryza glumaepatula OGLUM01G30780 I
Pavir.Ea00256 Panicum virgatum Pavir.Ea00256 N
Pavir.Ea02676 Panicum virgatum Pavir.Ea02676 N
Pavir.Eb00254 Panicum virgatum Pavir.Eb00254 N
F775_22442 Aegilops tauschii F775_22442 N
F775_22853 Aegilops tauschii F775_22853 N
Pavir.Eb02926 Panicum virgatum Pavir.Eb02926 N
GRMZM2G001875 Zea mays GRMZM2G001875 N
BGIOSGA004364 Oryza indica BGIOSGA004364 N
TRIUR3_05615 Triticum urartu TRIUR3_05615 N
GRMZM2G151205 Zea mays GRMZM2G151205 N
GRMZM2G167829 Zea mays GRMZM2G167829 N
TRIUR3_25771 Triticum urartu TRIUR3_25771 N
ONIVA01G33470 Oryza nivara ONIVA01G33470 N
TRAES3BF016200140CFD_g Triticum aestivum TRAES3BF016200140CFD_g N
Traes_3AL_7C031019E Triticum aestivum Traes_3AL_7C031019E N
MLOC_67874 Hordeum vulgare MLOC_67874 N
OB01G38240 Oryza brachyantha OB01G38240 N
Si002629m.g Setaria italica Si002629m.g N
Sb03g033160 Sorghum bicolor Sb03g033160 N
Sb03g003120 Sorghum bicolor Sb03g003120 N
OBART01G29250 Oryza barthii OBART01G29250 N
OS01G0722300 Oryza sativa OS01G0722300 N
ORUFI01G32340 Oryza rufipogon ORUFI01G32340 N
OGLUM01G33320 Oryza glumaepatula OGLUM01G33320 N