L596_g22844 (Steinernema carpocapsae)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 L596_g22844 T234541_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Six3
M00483_2.00 		Mus musculus
NNNAYMN
NKRTNNN		 PBM
Berger et al.(2008)
Six3_1732 		0.855 0.877
SIX3
M05159_2.00 		Homo sapiens
NNYGATABBN
NVVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_HT-SELEX 		0.855 0.877
SIX3
M10698_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX3_Q6 		0.855 0.877
SIX3
M05160_2.00 		Homo sapiens
NNYGATABVB
VBVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_Methyl-HT-SELEX 		0.855 0.877
Optix
M02124_2.00 		Drosophila melanogaster
NNNNNDATMN
NKATHNNNNN		 PBM
Weirauch et al.(2014)
pTH5437 		0.855 0.860
Optix
M03850_2.00 		Drosophila melanogaster
TAATYTAATTA
TAATTARATTA		 SELEX
Nitta et al.(2015)
Optix_1 		0.855 0.860
Optix
M06526_2.00 		Drosophila melanogaster
TGATA
TATCA		 B1H
Mathelier et al.(2014)
MA0199.1 		0.855 0.860
Optix
M06327_2.00 		Drosophila melanogaster
HHVTGATA
TATCABDD		 B1H
Zhu et al.(2011)
Optix_Cell_FBgn0025360 		0.855 0.860
Optix
M06328_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
Optix_SOLEXA_FBgn0025360 		0.855 0.860
SIX6
M00326_2.00 		Homo sapiens
NNDATMB
VKATHNN		 PBM
Barrera et al.(2016)
SIX6_REF 		0.853 0.860
Six6
M00169_2.00 		Mus musculus
NNAYMNN
NNKRTNN		 PBM
Badis et al.(2009)
Six6_2267 		0.853 0.860
Six6
M00412_2.00 		Mus musculus
NNNTGATAYCN
NGRTATCANNN		 PBM
Berger et al.(2008)
Six6_2267 		0.853 0.860
six3
M02102_2.00 		Oryzias latipes
NNDAYMBNNN
NNNVKRTHNN		 PBM
Weirauch et al.(2014)
pTH5928 		0.853 0.860
SIX6
M05357_2.00 		Homo sapiens
NNYGATASVB
VBSTATCRNN		 SELEX
Yin et al.(2017)
SIX6_eDBD_HT-SELEX 		0.853 0.860
SIX6
M00325_2.00 		Homo sapiens
NNNDATMB
VKATHNNN		 PBM
Barrera et al.(2016)
SIX6_H141N 		0.853 0.860
SIX6
M05358_2.00 		Homo sapiens
VBVYAYCRNN
NNYGRTRBVB		 SELEX
Yin et al.(2017)
SIX6_eDBD_Methyl-HT-SELEX 		0.853 0.860
SIX6
M00327_2.00 		Homo sapiens
NHDAYMBNN
NNVKRTHDN		 PBM
Barrera et al.(2016)
SIX6_T165A 		0.847 0.842
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
L596_g22844.t1 Homeodomain 178 234

Links

Other Homeodomain family TFs
Other Steinernema carpocapsae TFs

296 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
maker-pag1_scaffold_1127-snap-gene-0.1 Pythium aphanidermatum maker-pag1_scaffold_1127-snap-gene-0.1 I
Phyra95869 Phytophthora ramorum Phyra95869 N
PITG_03306 Phytophthora infestans PITG_03306 N
Physo144764 Phytophthora sojae Physo144764 N
Physo142192 Phytophthora sojae Physo142192 N
Physo134258 Phytophthora sojae Physo134258 N
Physo134018 Phytophthora sojae Physo134018 N
Physo134017 Phytophthora sojae Physo134017 N
Physo131272 Phytophthora sojae Physo131272 N
PITG_11760 Phytophthora infestans PITG_11760 N
Phyra84925 Phytophthora ramorum Phyra84925 N
Phyra80975 Phytophthora ramorum Phyra80975 N
Phyra73275 Phytophthora ramorum Phyra73275 N
maker-pve_contig_835-fgenesh-gene-0.1 Pythium vexans maker-pve_contig_835-fgenesh-gene-0.1 N
maker-pve_contig_642-fgenesh-gene-0.5 Pythium vexans maker-pve_contig_642-fgenesh-gene-0.5 N
maker-pve_contig_642-fgenesh-gene-0.1 Pythium vexans maker-pve_contig_642-fgenesh-gene-0.1 N
maker-pve_contig_1305-fgenesh-gene-0.0 Pythium vexans maker-pve_contig_1305-fgenesh-gene-0.0 N
maker-piw_contig_372-fgenesh-gene-0.4 Pythium iwayamai maker-piw_contig_372-fgenesh-gene-0.4 N
PYU1_G007450 Pythium ultimum PYU1_G007450 N
estExt_fgenesh1_pg.C_230105 Phytophthora capsici estExt_fgenesh1_pg.C_230105 N
estExt_fgenesh1_kg.C_21051 Phytophthora capsici estExt_fgenesh1_kg.C_21051 N
estExt_fgenesh1_kg.C_21048 Phytophthora capsici estExt_fgenesh1_kg.C_21048 N
estExt_fgenesh1_kg.C_10721 Phytophthora capsici estExt_fgenesh1_kg.C_10721 N
e_gw1.457.7.1 Phytophthora capsici e_gw1.457.7.1 N
PYU1_G013875 Pythium ultimum PYU1_G013875 N
PYU1_G013874 Pythium ultimum PYU1_G013874 N
PYU1_G009787 Pythium ultimum PYU1_G009787 N
maker-piw_contig_207-snap-gene-0.13 Pythium iwayamai maker-piw_contig_207-snap-gene-0.13 N
PYU1_G003405 Pythium ultimum PYU1_G003405 N
PYU1_G000710 Pythium ultimum PYU1_G000710 N
PITG_22459 Phytophthora infestans PITG_22459 N
PITG_20647 Phytophthora infestans PITG_20647 N
PITG_20646 Phytophthora infestans PITG_20646 N
PITG_14514 Phytophthora infestans PITG_14514 N
PITG_14513 Phytophthora infestans PITG_14513 N
F443_15766 Phytophthora parasitica F443_15766 N
fgenesh_scip_prom.46568.8092 Phytophthora kernoviae fgenesh_scip_prom.46568.8092 N
fgenesh_scip_prom.46568.3588 Phytophthora kernoviae fgenesh_scip_prom.46568.3588 N
fgenesh_scip_prom.46568.1669 Phytophthora kernoviae fgenesh_scip_prom.46568.1669 N
fgenesh_scip_prom.28083.4438 Phytophthora lateralis fgenesh_scip_prom.28083.4438 N
fgenesh_scip_prom.28083.4437 Phytophthora lateralis fgenesh_scip_prom.28083.4437 N
fgenesh-pir_contig_580-abinit-gene-0.31 Pythium irregulare fgenesh-pir_contig_580-abinit-gene-0.31 N
F443_18702 Phytophthora parasitica F443_18702 N
F443_15811 Phytophthora parasitica F443_15811 N
fgenesh_scip_prom.46568.8093 Phytophthora kernoviae fgenesh_scip_prom.46568.8093 N
F443_03190 Phytophthora parasitica F443_03190 N
ALNC14_122900 Albugo laibachii ALNC14_122900 N
ALNC14_090760 Albugo laibachii ALNC14_090760 N
ALNC14_066630 Albugo laibachii ALNC14_066630 N
SPRG_09686 Saprolegnia parasitica SPRG_09686 N
SPRG_03693 Saprolegnia parasitica SPRG_03693 N
SPRG_01018 Saprolegnia parasitica SPRG_01018 N
maker-par_contig_1213-fgenesh-gene-0.0 Pythium arrhenomanes maker-par_contig_1213-fgenesh-gene-0.0 N
SPRG_00586 Saprolegnia parasitica SPRG_00586 N
maker-pir_contig_85-snap-gene-0.26 Pythium irregulare maker-pir_contig_85-snap-gene-0.26 N
maker-pir_contig_698-fgenesh-gene-0.1 Pythium irregulare maker-pir_contig_698-fgenesh-gene-0.1 N
maker-pir_contig_551-fgenesh-gene-0.4 Pythium irregulare maker-pir_contig_551-fgenesh-gene-0.4 N
maker-pir_contig_320-snap-gene-0.13 Pythium irregulare maker-pir_contig_320-snap-gene-0.13 N
maker-pir_contig_2-fgenesh-gene-0.32 Pythium irregulare maker-pir_contig_2-fgenesh-gene-0.32 N
maker-par_contig_654-snap-gene-0.10 Pythium arrhenomanes maker-par_contig_654-snap-gene-0.10 N
maker-par_contig_1213-fgenesh-gene-0.2 Pythium arrhenomanes maker-par_contig_1213-fgenesh-gene-0.2 N
maker-piw_contig_3132-fgenesh-gene-0.1 Pythium iwayamai maker-piw_contig_3132-fgenesh-gene-0.1 N
maker-pag1_scaffold_66-snap-gene-0.49 Pythium aphanidermatum maker-pag1_scaffold_66-snap-gene-0.49 N
maker-pag1_scaffold_440-fgenesh-gene-0.4 Pythium aphanidermatum maker-pag1_scaffold_440-fgenesh-gene-0.4 N
maker-pag1_scaffold_287-snap-gene-0.16 Pythium aphanidermatum maker-pag1_scaffold_287-snap-gene-0.16 N
maker-pag1_scaffold_183-snap-gene-0.28 Pythium aphanidermatum maker-pag1_scaffold_183-snap-gene-0.28 N
HpaG810973 Hyaloperonospora arabidopsidis HpaG810973 N
HpaG808860 Hyaloperonospora arabidopsidis HpaG808860 N
HpaG802951 Hyaloperonospora arabidopsidis HpaG802951 N