maker-nMf.1.1.scaf05852-augustus-gene-0.4 (Meloidogyne floridensis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 maker-nMf.1.1.scaf05852-augustus-gene-0.4 T235046_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VSX1
M03087_2.00 		Homo sapiens
YTAATTAN
NTAATTAR		 SELEX
Jolma et al.(2013)
VSX1_1 		0.729 0.500
VSX1
M03088_2.00 		Homo sapiens
NNYAATTRRBN
NVYYAATTRNN		 SELEX
Jolma et al.(2013)
VSX1_2 		0.729 0.500
VSX1
M04941_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX 		0.729 0.500
VSX1
M04944_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX 		0.729 0.500
VSX1
M05869_2.00 		Homo sapiens
DGCTAATTAN
NTAATTAGCH		 SMiLE-seq
Isakova et al.(2017)
VSX1 		0.729 0.500
VSX1
M04942_2.00 		Homo sapiens
NTAAYGMN
NKCRTTAN		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1 		0.729 0.500
VSX1
M04943_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2 		0.729 0.500
VSX1
M04945_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1 		0.729 0.500
VSX1
M04946_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2 		0.729 0.500
VAX1
M03168_2.00 		Homo sapiens
YTAATKAN
NTMATTAR		 SELEX
Jolma et al.(2013)
VAX1_1 		0.688 0.286
VAX1
M05182_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX 		0.688 0.286
VAX1
M05183_2.00 		Homo sapiens
BTMATKRN
NYMATKAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX 		0.688 0.286
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
maker-nMf.1.1.scaf05852-augustus-gene-0.4-mRNA-1 Homeodomain 51 94

Links

Other Homeodomain family TFs
Other Meloidogyne floridensis TFs

1216 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Foxm1 Mus musculus ENSMUSG00000001517 D
FOXM1 Meleagris gallopavo ENSMGAG00000013924 D
FOXM1 Homo sapiens ENSG00000111206 D
ENSSHAG00000013615 Sarcophilus harrisii ENSSHAG00000013615 I
ENSOANG00000001393 Ornithorhynchus anatinus ENSOANG00000001393 I
ENSOARG00000011054 Ovis aries ENSOARG00000011054 I
FOXM1 Oryctolagus cuniculus ENSOCUG00000002703 I
FOXM1 Otolemur garnettii ENSOGAG00000034635 I
FOXM1 Ochotona princeps ENSOPRG00000015416 I
foxm1 Oryzias latipes ENSORLG00000016140 I
ENSPANG00000004991 Papio anubis ENSPANG00000004991 I
FOXM1 Procavia capensis ENSPCAG00000013185 I
ENSPPYG00000004153 Pongo abelii ENSPPYG00000004153 I
ENSPSIG00000016445 Pelodiscus sinensis ENSPSIG00000016445 I
FOXM1 Pteropus vampyrus ENSPVAG00000013227 I
Foxm1 Rattus norvegicus ENSRNOG00000005936 I
ENSMODG00000018349 Monodelphis domestica ENSMODG00000018349 I
FOXM1 Sus scrofa ENSSSCG00000000739 I
ENSSTOG00000016089 Ictidomys tridecemlineatus ENSSTOG00000016089 I
ENSTGUG00000013153 Taeniopygia guttata ENSTGUG00000013153 I
ENSTGUG00000013811 Taeniopygia guttata ENSTGUG00000013811 I
foxm1 Tetraodon nigroviridis ENSTNIG00000011394 I
Aan_R012083 Calypte anna Aan_R012083 I
Afo_R008076 Aptenodytes forsteri Afo_R008076 I
Alligator_sinensis_CCG004258.1 Alligator sinensis Alligator_sinensis_CCG004258.1 I
Brh_R009918 Buceros rhinoceros Brh_R009918 I
Cmyd_10021288 Chelonia mydas Cmyd_10021288 I
ENSP00000342307-D1 Bos grunniens ENSP00000342307-D1 I
Gfo_R008440 Geospiza fortis Gfo_R008440 I
Myotis_brandtii_FOXM1_10028675 Myotis brandtii Myotis_brandtii_FOXM1_10028675 I
Tal_R011971 Tyto alba Tal_R011971 I
foxm1.S Xenopus laevis XB-GENE-854084 I
FOXM1 Erinaceus europaeus ENSEEUG00000009221 I
ENSAMEG00000004869 Ailuropoda melanoleuca ENSAMEG00000004869 I
ENSAMXG00000000592 Astyanax mexicanus ENSAMXG00000000592 I
ENSAPLG00000011353 Anas platyrhynchos ENSAPLG00000011353 I
FOXM1 Bos taurus ENSBTAG00000015875 I
FOXM1 Canis familiaris ENSCAFG00000015642 I
FOXM1 Choloepus hoffmanni ENSCHOG00000005195 I
FOXM1 Callithrix jacchus ENSCJAG00000018781 I
FOXM1 Cavia porcellus ENSCPOG00000015373 I
ENSCSAG00000011261 Chlorocebus sabaeus ENSCSAG00000011261 I
foxm1 Danio rerio ENSDARG00000003200 I
ENSDNOG00000006678 Dasypus novemcinctus ENSDNOG00000006678 I
ENSDNOG00000018047 Dasypus novemcinctus ENSDNOG00000018047 I
Foxm1 Dipodomys ordii ENSDORG00000015227 I
FOXM1 Equus caballus ENSECAG00000019129 I
ENSMPUG00000009407 Mustela putorius furo ENSMPUG00000009407 I
FOXM1 Echinops telfairi ENSETEG00000019867 I
ENSFALG00000004834 Ficedula albicollis ENSFALG00000004834 I
FOXM1 Felis catus ENSFCAG00000025605 I
foxm1 Gasterosteus aculeatus ENSGACG00000019929 I
ENSGALG00000013420 Gallus gallus ENSGALG00000013420 I
FOXM1 Gorilla gorilla ENSGGOG00000009402 I
ENSGMOG00000005312 Gadus morhua ENSGMOG00000005312 I
ENSLACG00000007969 Latimeria chalumnae ENSLACG00000007969 I
FOXM1 Loxodonta africana ENSLAFG00000002856 I
ENSMEUG00000015998 Macropus eugenii ENSMEUG00000015998 I
FOXM1 Microcebus murinus ENSMICG00000000100 I
FOXM1 Myotis lucifugus ENSMLUG00000005292 I
FOXM1 Anolis carolinensis ENSACAG00000015333 I