nRc.2.0.1.g25699 (Romanomermis culicivorax)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 nRc.2.0.1.g25699 T235539_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VAX1
M03168_2.00 		Homo sapiens
YTAATKAN
NTMATTAR		 SELEX
Jolma et al.(2013)
VAX1_1 		0.704 0.422
VAX1
M05182_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX 		0.704 0.422
VAX1
M05183_2.00 		Homo sapiens
BTMATKRN
NYMATKAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX 		0.704 0.422
VSX1
M03087_2.00 		Homo sapiens
YTAATTAN
NTAATTAR		 SELEX
Jolma et al.(2013)
VSX1_1 		0.653 0.311
VSX1
M03088_2.00 		Homo sapiens
NNYAATTRRBN
NVYYAATTRNN		 SELEX
Jolma et al.(2013)
VSX1_2 		0.653 0.311
VSX1
M04941_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX 		0.653 0.311
VSX1
M04944_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX 		0.653 0.311
VSX1
M05869_2.00 		Homo sapiens
DGCTAATTAN
NTAATTAGCH		 SMiLE-seq
Isakova et al.(2017)
VSX1 		0.653 0.311
VSX1
M04942_2.00 		Homo sapiens
NTAAYGMN
NKCRTTAN		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1 		0.653 0.311
VSX1
M04943_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2 		0.653 0.311
VSX1
M04945_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1 		0.653 0.311
VSX1
M04946_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2 		0.653 0.311
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
nRc.2.0.1.t25699-RA Homeodomain 232 276

Links

Other Homeodomain family TFs
Other Romanomermis culicivorax TFs

1149 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA018048 Oryza indica BGIOSGA018048 I 0.000
OBART05G16540 Oryza barthii OBART05G16540 I 0.000
OGLUM05G17550 Oryza glumaepatula OGLUM05G17550 I 0.000
ONIVA05G17220 Oryza nivara ONIVA05G17220 I 0.000
OPUNC05G14600 Oryza punctata OPUNC05G14600 I 0.000
ORGLA05G0143100 Oryza glaberrima ORGLA05G0143100 I 0.000
ORUFI05G17750 Oryza rufipogon ORUFI05G17750 I 0.000
OS05G0415400 Oryza sativa OS05G0415400 I 0.000
Si036303m.g Setaria italica Si036303m.g I 0.000
Pavir.Ia03443 Panicum virgatum Pavir.Ia03443 I 0.000
Pavir.Ib01528 Panicum virgatum Pavir.Ib01528 I 0.000
GRMZM2G163843 Zea mays GRMZM2G163843 N 0.000