scaffold405-EXSNAP2012.17 (Pristionchus exspectatus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 scaffold405-EXSNAP2012.17 T235984_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Pbx1
M00513_2.00 		Mus musculus
NNDKANNNN
NNNNTMHNN		 PBM
Berger et al.(2008)
Pbx1_3203 		0.848 0.789
PBX1
M05362_2.00 		Homo sapiens
NTGATKGAYR
YRTCMATCAN		 SELEX
Yin et al.(2017)
PBX1_eDBD_HT-SELEX 		0.848 0.789
PBX1
M05364_2.00 		Homo sapiens
DTGMTKGRYN
NRYCMAKCAH		 SELEX
Yin et al.(2017)
PBX1_FL_HT-SELEX 		0.848 0.789
PBX1
M02685_2.00 		Homo sapiens
WWTGATTGATND
HNATCAATCAWW		 SELEX
Mathelier et al.(2014)
MA0070.1 		0.848 0.789
PBX1
M09164_2.00 		Homo sapiens
DGABTGRCRG
CYGYCAVTCH		 Misc
Kulakovskiy et al.(2013)
PBX1_HUMAN.H11MO.0.A 		0.848 0.789
Pbx3
M09205_2.00 		Mus musculus
BBBTGATTGRYNDN
NHNRYCAATCAVVV		 Misc
Kulakovskiy et al.(2013)
PBX3_MOUSE.H11MO.0.A 		0.848 0.789
PBX1
M09561_2.00 		Homo sapiens
TGABTGACAGSC
GSCTGTCAVTCA		 Misc
Heinz et al.(2010)
MCF7-PBX1_GSE28007 		0.848 0.789
PBX1
M10748_2.00 		Homo sapiens
WTKATTRDT
AHYAATMAW		 Transfac
Matys et al.(2006)
V$PBX1_01 		0.848 0.789
PBX1
M10749_2.00 		Homo sapiens
DNHTTGATTGATKDB
VHMATCAATCAADNH		 Transfac
Matys et al.(2006)
V$PBX1_02 		0.848 0.789
PBX1
M10750_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_03 		0.848 0.789
PBX1
M10751_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_05 		0.848 0.789
PBX1
M10752_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_10 		0.848 0.789
PBX1
M10753_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_Q3 		0.848 0.789
PBX1
M05363_2.00 		Homo sapiens
DTGAKKGAYG
CRTCMMTCAH		 SELEX
Yin et al.(2017)
PBX1_eDBD_Methyl-HT-SELEX 		0.848 0.789
PBX1
M05365_2.00 		Homo sapiens
MRTCAATCMH
DKGATTGAYK		 SELEX
Yin et al.(2017)
PBX1_FL_Methyl-HT-SELEX 		0.848 0.789
pbx4
M02110_2.00 		Tetraodon nigroviridis
TTGAYGDV
BHCRTCAA		 PBM
Weirauch et al.(2014)
pTH6425 		0.848 0.772
PBX2
M08134_2.00 		Homo sapiens
NWGAKTGACABN
NVTGTCAMTCWN		 ChIP-seq
Mathelier et al.(2014)
MA1113.1 		0.848 0.772
PBX2
M09165_2.00 		Homo sapiens
KRVHKTGATTGAWKN
NMWTCAATCAMDBYM		 Misc
Kulakovskiy et al.(2013)
PBX2_HUMAN.H11MO.0.C 		0.848 0.772
Pbx2
M09199_2.00 		Mus musculus
KRVHKTGATTGAWKN
NMWTCAATCAMDBYM		 Misc
Kulakovskiy et al.(2013)
PBX2_MOUSE.H11MO.0.C 		0.848 0.772
exd
M06487_2.00 		Drosophila melanogaster
YRTCAAAN
NTTTGAYR		 B1H
Mathelier et al.(2014)
MA0222.1 		0.803 0.789
exd
M06243_2.00 		Drosophila melanogaster
YRTCAAAN
NTTTGAYR		 B1H
Zhu et al.(2011)
Exd_Cell_FBgn0000611 		0.803 0.789
exd
M06244_2.00 		Drosophila melanogaster
NWRNWYNAAA
TTTNRWNYWN		 B1H
Zhu et al.(2011)
exd_FlyReg_FBgn0000611 		0.803 0.789
exd
M06245_2.00 		Drosophila melanogaster
NDTGAYRW
WYRTCAHN		 B1H
Zhu et al.(2011)
exd_SOLEXA_2_FBgn0000611 		0.803 0.789
exd
M06246_2.00 		Drosophila melanogaster
NNDTGAYR
YRTCAHNN		 B1H
Zhu et al.(2011)
Exd_SOLEXA_FBgn0000611 		0.803 0.789
PBX4
M00277_2.00 		Homo sapiens
NNDDWHDNNN
NNNHDWHHNN		 PBM
Barrera et al.(2016)
PBX4_REF 		0.801 0.737
PBX4
M10649_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX4_01 		0.801 0.737
CBG10835
M01243_2.00 		Caenorhabditis briggsae
NNTKAYDNN
NNHRTMANN		 PBM
Lambert et al.(2019)
pTH11444 		0.705 0.561
PBX4
M00276_2.00 		Homo sapiens
NYTAATTADNN
NNHTAATTARN		 PBM
Barrera et al.(2016)
PBX4_R215Q 		0.662 0.719
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold405-EXSNAP2012.17 Homeodomain 185 244

Links

Other Homeodomain family TFs
Other Pristionchus exspectatus TFs

435 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
NHLH1 Homo sapiens ENSG00000171786 D
NHLH2 Homo sapiens ENSG00000177551 D
Nhlh2 Mus musculus ENSMUSG00000048540 D
Nhlh1 Mus musculus ENSMUSG00000051251 D
HLH4C Drosophila melanogaster FBgn0011277 D
AAEL004428 Aedes aegypti AAEL004428 I
ACEP10202 Atta cephalotes ACEP10202 I
ACYPI007008 Acyrthosiphon pisum ACYPI007008 I
ADAC006978 Anopheles darlingi ADAC006978 I
AGAP004907 Anopheles gambiae AGAP004907 I
BGIBMGA008476 Bombyx mori BGIBMGA008476 I
CapteG162858 Capitella teleta CapteG162858 I
CGI_10002829 Crassostrea gigas CGI_10002829 I
DAPPUDRAFT_66944 Daphnia pulex DAPPUDRAFT_66944 I
NHLH2 Anolis carolinensis ENSACAG00000003304 I
ENSACAG00000010649 Anolis carolinensis ENSACAG00000010649 I
ENSAMEG00000010851 Ailuropoda melanoleuca ENSAMEG00000010851 I
ENSAMXG00000026006 Astyanax mexicanus ENSAMXG00000026006 I
NHLH2 Bos taurus ENSBTAG00000015067 I
NHLH1 Bos taurus ENSBTAG00000020027 I
NHLH2 Canis familiaris ENSCAFG00000009767 I
NHLH1 Canis familiaris ENSCAFG00000023513 I
NHLH1 Callithrix jacchus ENSCJAG00000005775 I
NHLH2 Callithrix jacchus ENSCJAG00000012807 I
NHLH1 Cavia porcellus ENSCPOG00000021596 I
NHLH2 Cavia porcellus ENSCPOG00000026593 I
ENSCSAG00000000087 Chlorocebus sabaeus ENSCSAG00000000087 I
ENSCSAG00000000172 Chlorocebus sabaeus ENSCSAG00000000172 I
nhlh2 Danio rerio ENSDARG00000025495 I
NHLH2 Dasypus novemcinctus ENSDNOG00000008961 I
NHLH1 Dasypus novemcinctus ENSDNOG00000038600 I
NHLH1 Equus caballus ENSECAG00000004612 I
NHLH1 Echinops telfairi ENSETEG00000009677 I
ENSFALG00000006103 Ficedula albicollis ENSFALG00000006103 I
ENSFCAG00000028313 Felis catus ENSFCAG00000028313 I
nhlh2 Gasterosteus aculeatus ENSGACG00000014053 I
NHLH1 Gallus gallus ENSGALG00000025817 I
NHLH2 Gorilla gorilla ENSGGOG00000008283 I
NHLH1 Gorilla gorilla ENSGGOG00000015736 I
ENSGMOG00000020309 Gadus morhua ENSGMOG00000020309 I
ENSLACG00000011363 Latimeria chalumnae ENSLACG00000011363 I
NHLH2 Loxodonta africana ENSLAFG00000007456 I
NHLH1 Loxodonta africana ENSLAFG00000011163 I
ENSLOCG00000017787 Lepisosteus oculatus ENSLOCG00000017787 I
ENSMEUG00000003022 Macropus eugenii ENSMEUG00000003022 I
ENSMGAG00000016096 Meleagris gallopavo ENSMGAG00000016096 I
ENSMICG00000002851 Microcebus murinus ENSMICG00000002851 I
NHLH1 Microcebus murinus ENSMICG00000012700 I
NHLH2 Myotis lucifugus ENSMLUG00000015989 I
ENSMMUG00000008971 Macaca mulatta ENSMMUG00000008971 I
NHLH1 Macaca mulatta ENSMMUG00000021865 I
NHLH2 Monodelphis domestica ENSMODG00000023228 I
NHLH1 Monodelphis domestica ENSMODG00000024591 I
ENSMPUG00000019387 Mustela putorius furo ENSMPUG00000019387 I
ENSMPUG00000019473 Mustela putorius furo ENSMPUG00000019473 I
ENSNLEG00000013637 Nomascus leucogenys ENSNLEG00000013637 I
NHLH2 Ornithorhynchus anatinus ENSOANG00000009820 I
NHLH2 Oryctolagus cuniculus ENSOCUG00000015744 I
NHLH1 Otolemur garnettii ENSOGAG00000010592 I
NHLH2 Otolemur garnettii ENSOGAG00000034540 I
ENSONIG00000020673 Oreochromis niloticus ENSONIG00000020673 I
ENSONIG00000021015 Oreochromis niloticus ENSONIG00000021015 I
NHLH2 Ochotona princeps ENSOPRG00000006661 I
ENSPANG00000001481 Papio anubis ENSPANG00000001481 I
ENSPANG00000011970 Papio anubis ENSPANG00000011970 I
NHLH1 Procavia capensis ENSPCAG00000009061 I
ENSPFOG00000020651 Poecilia formosa ENSPFOG00000020651 I
ENSPPYG00000000632 Pongo abelii ENSPPYG00000000632 I
ENSPPYG00000000988 Pongo abelii ENSPPYG00000000988 I
NHLH2 Pan troglodytes ENSPTRG00000001149 I
NHLH1 Pan troglodytes ENSPTRG00000001551 I
NHLH1 Pteropus vampyrus ENSPVAG00000007987 I
NHLH2 Pteropus vampyrus ENSPVAG00000012688 I
Nhlh1 Rattus norvegicus ENSRNOG00000005166 I
Nhlh2 Rattus norvegicus ENSRNOG00000054375 I
ENSSHAG00000006613 Sarcophilus harrisii ENSSHAG00000006613 I
ENSSHAG00000015472 Sarcophilus harrisii ENSSHAG00000015472 I
NHLH1 Sus scrofa ENSSSCG00000006384 I
NHLH2 Sus scrofa ENSSSCG00000006744 I
ENSSTOG00000019698 Ictidomys tridecemlineatus ENSSTOG00000019698 I
ENSSTOG00000027988 Ictidomys tridecemlineatus ENSSTOG00000027988 I
NHLH1 Taeniopygia guttata ENSTGUG00000013389 I
nhlh2 Tetraodon nigroviridis ENSTNIG00000010331 I
nhlh2 Takifugu rubripes ENSTRUG00000003636 I
ENSTSYG00000000582 Tarsius syrichta ENSTSYG00000000582 I
NHLH1 Tursiops truncatus ENSTTRG00000001840 I
NHLH2 Tursiops truncatus ENSTTRG00000003112 I
ENSXMAG00000020348 Xiphophorus maculatus ENSXMAG00000020348 I
GA15893 Drosophila pseudoobscura FBgn0075909 I
GF20856 Drosophila ananassae FBgn0097862 I
GG18528 Drosophila erecta FBgn0110741 I
GH17630 Drosophila grimshawi FBgn0125100 I
GI16068 Drosophila mojavensis FBgn0138817 I
GL14555 Drosophila persimilis FBgn0152160 I
GM12676 Drosophila sechellia FBgn0167612 I
GD16284 Drosophila simulans FBgn0187911 I
GJ15714 Drosophila virilis FBgn0202902 I
GK16457 Drosophila willistoni FBgn0218459 I
GE16844 Drosophila yakuba FBgn0234336 I
GB49291 Apis mellifera GB49291 I
GB53325 Apis mellifera GB53325 I
HelroG138545 Helobdella robusta HelroG138545 I
HelroG153470 Helobdella robusta HelroG153470 I
HelroG94416 Helobdella robusta HelroG94416 I
HMEL010237 Heliconius melpomene HMEL010237 I
ISCW014797 Ixodes scapularis ISCW014797 I
KGM_06532 Danaus plexippus KGM_06532 I
L798_00559 Zootermopsis nevadensis L798_00559 I
LotgiG133561 Lottia gigantea LotgiG133561 I
MCINX015834 Melitaea cinxia MCINX015834 I
MESCA010279 Megaselia scalaris MESCA010279 I
NV10733 Nasonia vitripennis NV10733 I
PHUM229200 Pediculus humanus PHUM229200 I
RPRC001173 Rhodnius prolixus RPRC001173 I
SMAR007908 Strigamia maritima SMAR007908 I
SPU_009231 Strongylocentrotus purpuratus SPU_009231 I
TC007725 Tribolium castaneum TC007725 I
YQE_00442 Dendroctonus ponderosae YQE_00442 I
YQE_04623 Dendroctonus ponderosae YQE_04623 I
YQE_11502 Dendroctonus ponderosae YQE_11502 I
Aan_R014318 Calypte anna Aan_R014318 I
Alligator_sinensis_CCG011163.1 Alligator sinensis Alligator_sinensis_CCG011163.1 I
Alligator_sinensis_CCG018876.1 Alligator sinensis Alligator_sinensis_CCG018876.1 I
Brh_R005283 Buceros rhinoceros Brh_R005283 I
Cflo_11933--XP_001122281.1_APIME Camponotus floridanus Cflo_11933--XP_001122281.1_APIME I
Cmyd_10001044 Chelonia mydas Cmyd_10001044 I
Cmyd_10010324 Chelonia mydas Cmyd_10010324 I
Cmyd_10014342 Chelonia mydas Cmyd_10014342 I
ENSP00000302189 Macaca fascicularis ENSP00000302189 I
ENSP00000358519-D1 Bos grunniens ENSP00000358519-D1 I
ENSP00000405915 Macaca fascicularis ENSP00000405915 I
Gfo_R014815 Geospiza fortis Gfo_R014815 I
Hsal_11874--XP_001122281.1_APIME Harpegnathos saltator Hsal_11874--XP_001122281.1_APIME I
Ogr08231 Ophisaurus gracilis Ogr08231 I
Pvit_07565 Pogona vitticeps Pvit_07565 I
Ocbimv22001940m.g Octopus bimaculoides Ocbimv22001940m.g I
Sakowv30004475m.g Saccoglossus kowalevskii Sakowv30004475m.g I
CLEC002464 Cimex lectularius CLEC002464 I
HHAL001761-PA Halyomorpha halys HHAL001761-PA I
LCUP012274 Lucilia cuprina LCUP012274 I
LDEC000946 Leptinotarsa decemlineata LDEC000946 I
SMU15030866 Schmidtea mediterranea SMU15030866 I
nhlh1 Xenopus tropicalis XB-GENE-989790 I
nhlh1.L Xenopus laevis XB-GENE-989792 I
AALB004585 Anopheles albimanus AALB004585 I
AARA003512 Anopheles arabiensis AARA003512 I
AATE010880 Anopheles atroparvus AATE010880 I
ACOM036372 Anopheles coluzzii ACOM036372 I
ACUA009159 Anopheles culicifacies ACUA009159 I
ACUA026679 Anopheles culicifacies ACUA026679 I
ADIR001683 Anopheles dirus ADIR001683 I
AEPI011485 Anopheles epiroticus AEPI011485 I
AFAF009162 Anopheles farauti AFAF009162 I
AFUN005050 Anopheles funestus AFUN005050 I
AMAM022568 Anopheles maculatus AMAM022568 I
AMEC009920 Anopheles melas AMEC009920 I
AMEM004741 Anopheles merus AMEM004741 I
AMIN011405 Anopheles minimus AMIN011405 I
AQUA014034 Anopheles quadriannulatus AQUA014034 I
ASIS019843 Anopheles sinensis ASIS019843 I
ASTEI10641 Anopheles stephensi ASTEI10641 I
BGLB013717 Biomphalaria glabrata BGLB013717 I
LLOJ002704 Lutzomyia longipalpis LLOJ002704 I
MDOA007431 Musca domestica MDOA007431 I
MDOA013398 Musca domestica MDOA013398 I
PPAI007861 Phlebotomus papatasi PPAI007861 I
ACAC_0000390701 Angiostrongylus cantonensis ACAC_0000390701 I
BXY_0231500 Bursaphelenchus xylophilus BXY_0231500 I
HPBE_0000907401 Heligmosomoides bakeri HPBE_0000907401 I
nRc.2.0.1.g35713 Romanomermis culicivorax nRc.2.0.1.g35713 I