SMUV_0000700101 (Syphacia muris)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 SMUV_0000700101 T236205_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ceh-28
M08210_2.00 		Caenorhabditis elegans
AATCGATW
WATCGATT		 ChIP-seq
Contrino et al.(2012)
Mw138 		0.825 0.789
NKX2-5
M00323_2.00 		Homo sapiens
NWYAAGTGSNN
NNSCACTTRWN		 PBM
Barrera et al.(2016)
NKX2-5_REF 		0.822 0.737
Nkx2-5
M00404_2.00 		Mus musculus
NNNRAGDRBN
NVYHCTYNNN		 PBM
Berger et al.(2008)
Nkx2-5_3436 		0.822 0.737
NKX2-5
M05346_2.00 		Homo sapiens
BHYAAGTGBN
NVCACTTRDV		 SELEX
Yin et al.(2017)
NKX2-5_FL_HT-SELEX 		0.822 0.737
Nkx2-5
M02686_2.00 		Mus musculus
WTAAKWK
MWMTTAW		 SELEX
Mathelier et al.(2014)
MA0063.1 		0.822 0.737
Nkx2-5
M08136_2.00 		Mus musculus
SYTGAGWGSYH
DRSCWCTCARS		 ChIP-seq
Mathelier et al.(2014)
MA0503.1 		0.822 0.737
NKX2-5
M09163_2.00 		Homo sapiens
BKRAGWGV
BCWCTYMV		 Misc
Kulakovskiy et al.(2013)
NKX25_HUMAN.H11MO.0.B 		0.822 0.737
Nkx2-5
M09177_2.00 		Mus musculus
NBYBRAGTGS
SCACTYVRVN		 Misc
Kulakovskiy et al.(2013)
NKX25_MOUSE.H11MO.0.A 		0.822 0.737
Nkx2-5
M09567_2.00 		Mus musculus
HBRAGWGBNN
NNVCWCTYVD		 Misc
Heinz et al.(2010)
HL1-Nkx2.5.biotin_GSE21529 		0.822 0.737
NKX2-5
M10742_2.00 		Homo sapiens
TYAAGTG
CACTTRA		 Transfac
Matys et al.(2006)
V$NKX25_01 		0.822 0.737
NKX2-5
M10743_2.00 		Homo sapiens
CWTAATTV
BAATTAWG		 Transfac
Matys et al.(2006)
V$NKX25_02 		0.822 0.737
NKX2-5
M10744_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NKX25_Q5 		0.822 0.737
NKX2-5
M10745_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NKX25_Q6 		0.822 0.737
NKX2-5
M05347_2.00 		Homo sapiens
BTYAAGTGGN
NCCACTTRAV		 SELEX
Yin et al.(2017)
NKX2-5_FL_Methyl-HT-SELEX_1 		0.822 0.737
NKX2-5
M05348_2.00 		Homo sapiens
BTYAACGAB
VTCGTTRAV		 SELEX
Yin et al.(2017)
NKX2-5_FL_Methyl-HT-SELEX_2 		0.822 0.737
Nkx2-3
M00497_2.00 		Mus musculus
NNRAGDRNN
NNYHCTYNN		 PBM
Berger et al.(2008)
Nkx2-3_3435 		0.822 0.719
NKX2-3
M05042_2.00 		Homo sapiens
NNBAAGTGBN
NVCACTTVNN		 SELEX
Yin et al.(2017)
NKX2-3_eDBD_HT-SELEX 		0.822 0.719
NKX2-3
M05045_2.00 		Homo sapiens
BNBAAGTGBN
NVCACTTVNV		 SELEX
Yin et al.(2017)
NKX2-3_FL_HT-SELEX 		0.822 0.719
NKX2-5
M00322_2.00 		Homo sapiens
NNNRNNN
NNNYNNN		 PBM
Barrera et al.(2016)
NKX2-5_R190C 		0.822 0.719
NKX2-5
M00324_2.00 		Homo sapiens
NHNNNNN
NNNNNDN		 PBM
Barrera et al.(2016)
NKX2-5_T178M 		0.822 0.719
NKX2-3
M05043_2.00 		Homo sapiens
BNBAAGTGBN
NVCACTTVNV		 SELEX
Yin et al.(2017)
NKX2-3_eDBD_Methyl-HT-SELEX_1 		0.822 0.719
NKX2-3
M05044_2.00 		Homo sapiens
SDYAACGHB
VDCGTTRHS		 SELEX
Yin et al.(2017)
NKX2-3_eDBD_Methyl-HT-SELEX_2 		0.822 0.719
NKX2-3
M05046_2.00 		Homo sapiens
BNBAAGTGBN
NVCACTTVNV		 SELEX
Yin et al.(2017)
NKX2-3_FL_Methyl-HT-SELEX_1 		0.822 0.719
NKX2-3
M05047_2.00 		Homo sapiens
SWYAACSHB
VDSGTTRWS		 SELEX
Yin et al.(2017)
NKX2-3_FL_Methyl-HT-SELEX_2 		0.822 0.719
scro
M03854_2.00 		Drosophila melanogaster
NNBRMGTGB
VCACKYVNN		 SELEX
Nitta et al.(2015)
scro_1 		0.818 0.702
NKX2-5
M00321_2.00 		Homo sapiens
HNAAGTRBNN
NNVYACTTND		 PBM
Barrera et al.(2016)
NKX2-5_R161P 		0.818 0.719
ceh-24
M02181_2.00 		Caenorhabditis elegans
NNRAKWRNN
NNYWMTYNN		 PBM
Weirauch et al.(2014)
pTH6327 		0.813 0.649
Nkx2-1
M00385_2.00 		Mus musculus
NNRAGDRN
NYHCTYNN		 PBM
Berger et al.(2008)
Titf1_1722 		0.797 0.649
Nkx2-4
M00514_2.00 		Mus musculus
NNRAGDRBNN
NNVYHCTYNN		 PBM
Berger et al.(2008)
Nkx2-4_3074 		0.797 0.649
NKX2-1
M09146_2.00 		Homo sapiens
BTKGAGWGBN
NVCWCTCMAV		 Misc
Kulakovskiy et al.(2013)
NKX21_HUMAN.H11MO.0.A 		0.797 0.649
Nkx2-1
M09171_2.00 		Mus musculus
NBTKGAGWGB
VCWCTCMAVN		 Misc
Kulakovskiy et al.(2013)
NKX21_MOUSE.H11MO.0.A 		0.797 0.649
Nkx2-1
M09563_2.00 		Mus musculus
BTBRAGWGBH
DVCWCTYVAV		 Misc
Heinz et al.(2010)
LungAC-Nkx2.1_GSE43252 		0.797 0.649
NKX2-1
M10694_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TITF1_Q3 		0.797 0.649
NKX2-1
M10695_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TTF1_Q5_01 		0.797 0.649
NKX2-1
M10696_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TTF1_Q5 		0.797 0.649
NKX2-1
M10697_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TTF1_Q6 		0.797 0.649
NKX2-5
M00320_2.00 		Homo sapiens
NHBAAKWRN
NYWMTTVDN		 PBM
Barrera et al.(2016)
NKX2-5_K183E 		0.789 0.719
Nkx2-6
M00496_2.00 		Mus musculus
HYAAGTRBNN
NNVYACTTRD		 PBM
Berger et al.(2008)
Nkx2-6_3437 		0.788 0.667
tin
M00559_2.00 		Drosophila melanogaster
NWYAAGTGGNN
NNCCACTTRWN		 PBM
Busser et al.(2012a)
Tin 		0.786 0.614
tin
M03809_2.00 		Drosophila melanogaster
BTYAAGTGSN
NSCACTTRAV		 SELEX
Nitta et al.(2015)
tin_1 		0.786 0.614
tin
M06284_2.00 		Drosophila melanogaster
BTYAAGTG
CACTTRAV		 B1H
Zhu et al.(2011)
Tin_Cell_FBgn0004110 		0.786 0.614
tin
M06285_2.00 		Drosophila melanogaster
BCTCAAGTGSVN
NBSCACTTGAGV		 B1H
Zhu et al.(2011)
tin_FlyReg_FBgn0004110 		0.786 0.614
tin
M06286_2.00 		Drosophila melanogaster
BWYAAGTR
YACTTRWV		 B1H
Zhu et al.(2011)
Tin_SOLEXA_FBgn0004110 		0.786 0.614
tin
M08421_2.00 		Drosophila melanogaster
DBTCRAGTGS
SCACTYGAVH		 ChIP-chip
Mathelier et al.(2014)
MA0247.2 		0.786 0.614
Nkx2-9
M00520_2.00 		Mus musculus
NNNRAGDRBN
NVYHCTYNNN		 PBM
Berger et al.(2008)
Nkx2-9_3082 		0.762 0.649
Nkx2-9
M00800_2.00 		Mus musculus
NNRAGDRBNN
NNVYHCTYNN		 PBM
Weirauch et al.(2013)
pTH2842 		0.762 0.649
Nkx2-9
M09215_2.00 		Mus musculus
BTCAAGKRB
VYMCTTGAV		 Misc
Kulakovskiy et al.(2013)
NKX28_MOUSE.H11MO.0.C 		0.762 0.649
vnd
M06551_2.00 		Drosophila melanogaster
WYTCAAGTR
YACTTGARW		 B1H
Mathelier et al.(2014)
MA0253.1 		0.756 0.649
vnd
M06377_2.00 		Drosophila melanogaster
WYTCAAGTR
YACTTGARW		 B1H
Zhu et al.(2011)
Vnd_Cell_FBgn0003986 		0.756 0.649
vnd
M06378_2.00 		Drosophila melanogaster
KYTSAAGWGY
RCWCTTSARM		 B1H
Zhu et al.(2011)
vnd_FlyReg_FBgn0003986 		0.756 0.649
vnd
M06379_2.00 		Drosophila melanogaster
BTBAAGTR
YACTTVAV		 B1H
Zhu et al.(2011)
Vnd_SOLEXA_FBgn0003986 		0.756 0.649
vnd
M09683_2.00 		Drosophila melanogaster
TCAAGTGB
VCACTTGA		 Misc
Kulakovskiy et al.(2009)
vnd 		0.756 0.649
Nkx2-2
M00438_2.00 		Mus musculus
NNNRAGDRN
NYHCTYNNN		 PBM
Berger et al.(2008)
Nkx2-2_2823 		0.756 0.632
Nkx2-2
M09190_2.00 		Mus musculus
NTBRAGWGBBN
NVVCWCTYVAN		 Misc
Kulakovskiy et al.(2013)
NKX22_MOUSE.H11MO.0.A 		0.756 0.632
NKX2-2
M10681_2.00 		Homo sapiens
WTAAGTRBTT
AAVYACTTAW		 Transfac
Matys et al.(2006)
V$NKX22_01 		0.756 0.632
NKX2-2
M10682_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NKX2B_Q3_01 		0.756 0.632
NKX2-2
M10683_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NKX2B_Q3 		0.756 0.632
NKX2-8
M00302_2.00 		Homo sapiens
NNRAGDRB
VYHCTYNN		 PBM
Barrera et al.(2016)
NKX2-8_REF 		0.731 0.632
NKX2-8
M05149_2.00 		Homo sapiens
BTSRAGTGBN
NVCACTYSAV		 SELEX
Yin et al.(2017)
NKX2-8_FL_HT-SELEX 		0.731 0.632
NKX2-8
M09145_2.00 		Homo sapiens
BTCAAGKRB
VYMCTTGAV		 Misc
Kulakovskiy et al.(2013)
NKX28_HUMAN.H11MO.0.C 		0.731 0.632
NKX2-8
M00301_2.00 		Homo sapiens
NNRAKDRB
VYHMTYNN		 PBM
Barrera et al.(2016)
NKX2-8_A94T 		0.731 0.632
NKX2-8
M05150_2.00 		Homo sapiens
GCARTAACGACATC
GATGTCGTTAYTGC		 SELEX
Yin et al.(2017)
NKX2-8_FL_Methyl-HT-SELEX_1 		0.731 0.632
NKX2-8
M05151_2.00 		Homo sapiens
BTSAAGTGBN
NVCACTTSAV		 SELEX
Yin et al.(2017)
NKX2-8_FL_Methyl-HT-SELEX_2 		0.731 0.632
NKX2-8
M05152_2.00 		Homo sapiens
BTBAACGAB
VTCGTTVAV		 SELEX
Yin et al.(2017)
NKX2-8_FL_Methyl-HT-SELEX_3 		0.731 0.632
ceh-22
M00376_2.00 		Caenorhabditis elegans
WBRAGTRBNN
NNVYACTYVW		 PBM
Berger et al.(2006)
Ceh-22 		0.729 0.614
Q24782_9CNID
M02206_2.00 		Eleutheria dichotoma
TTAATTAA
TTAATTAA		 PBM
Weirauch et al.(2014)
pTH5486 		0.617 0.544
CDX1
M10761_2.00 		Gallus gallus
BDBWAAK
MTTWVHV		 Transfac
Matys et al.(2006)
V$CDXA_01 		0.606 0.491
CDX1
M10762_2.00 		Gallus gallus
WWWWMYR
YRKWAWW		 Transfac
Matys et al.(2006)
V$CDXA_02 		0.606 0.491
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SMUV_0000700101-mRNA-1 Homeodomain 96 152

Links

Other Homeodomain family TFs
Other Syphacia muris TFs

861 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CG18619 Drosophila melanogaster FBgn0032202 D
CpipJ_CPIJ011725 Culex pipiens CpipJ_CPIJ011725 I
CpipJ_CPIJ020318 Culex pipiens CpipJ_CPIJ020318 I
AAEL007444 Aedes aegypti AAEL007444 I
ACYPI000682 Acyrthosiphon pisum ACYPI000682 I
ADAC004626 Anopheles darlingi ADAC004626 I
AGAP008762 Anopheles gambiae AGAP008762 I
BGIBMGA009250 Bombyx mori BGIBMGA009250 I
CapteG70142 Capitella teleta CapteG70142 I
CapteG81335 Capitella teleta CapteG81335 I
CGI_10010182 Crassostrea gigas CGI_10010182 I
CPIJ011725 Culex quinquefasciatus CPIJ011725 I
CPIJ020318 Culex quinquefasciatus CPIJ020318 I
DAPPUDRAFT_227362 Daphnia pulex DAPPUDRAFT_227362 I
CREBL2 Anolis carolinensis ENSACAG00000004363 I
ENSAMEG00000010773 Ailuropoda melanoleuca ENSAMEG00000010773 I
ENSAMXG00000000720 Astyanax mexicanus ENSAMXG00000000720 I
ENSAPLG00000013223 Anas platyrhynchos ENSAPLG00000013223 I
CREBL2 Bos taurus ENSBTAG00000011957 I
CREBL2 Canis familiaris ENSCAFG00000013248 I
CREBL2 Choloepus hoffmanni ENSCHOG00000008864 I
CREBL2 Callithrix jacchus ENSCJAG00000021638 I
ENSCPOG00000010295 Cavia porcellus ENSCPOG00000010295 I
ENSCSAG00000008595 Chlorocebus sabaeus ENSCSAG00000008595 I
crebl2 Danio rerio ENSDARG00000104049 I
CREBL2 Dasypus novemcinctus ENSDNOG00000014119 I
ENSDORG00000000996 Dipodomys ordii ENSDORG00000000996 I
CREBL2 Equus caballus ENSECAG00000022654 I
CREBL2 Echinops telfairi ENSETEG00000008519 I
ENSFALG00000004638 Ficedula albicollis ENSFALG00000004638 I
CREBL2 Felis catus ENSFCAG00000030068 I
CREBL2 Homo sapiens ENSG00000111269 I
crebl2 Gasterosteus aculeatus ENSGACG00000000613 I
ENSGALG00000028812 Gallus gallus ENSGALG00000028812 I
CREBL2 Gorilla gorilla ENSGGOG00000024494 I
ENSGMOG00000017023 Gadus morhua ENSGMOG00000017023 I
ENSLACG00000018450 Latimeria chalumnae ENSLACG00000018450 I
CREBL2 Loxodonta africana ENSLAFG00000005950 I
ENSLOCG00000016490 Lepisosteus oculatus ENSLOCG00000016490 I
ENSMEUG00000007025 Macropus eugenii ENSMEUG00000007025 I
CREBL2 Meleagris gallopavo ENSMGAG00000013274 I
CREBL2 Myotis lucifugus ENSMLUG00000003150 I
CREBL2 Macaca mulatta ENSMMUG00000006677 I
ENSMODG00000027835 Monodelphis domestica ENSMODG00000027835 I
ENSMPUG00000011740 Mustela putorius furo ENSMPUG00000011740 I
Crebl2 Mus musculus ENSMUSG00000032652 I
ENSNLEG00000003583 Nomascus leucogenys ENSNLEG00000003583 I
CREBL2 Ornithorhynchus anatinus ENSOANG00000000735 I
ENSOARG00000020855 Ovis aries ENSOARG00000020855 I
CREBL2 Oryctolagus cuniculus ENSOCUG00000016255 I
CREBL2 Otolemur garnettii ENSOGAG00000030941 I
ENSONIG00000007545 Oreochromis niloticus ENSONIG00000007545 I
CREBL2 Ochotona princeps ENSOPRG00000014420 I
crebl2 Oryzias latipes ENSORLG00000020771 I
ENSPANG00000004278 Papio anubis ENSPANG00000004278 I
ENSPCAG00000009944 Procavia capensis ENSPCAG00000009944 I
ENSPFOG00000001885 Poecilia formosa ENSPFOG00000001885 I
ENSPPYG00000004305 Pongo abelii ENSPPYG00000004305 I
ENSPSIG00000009401 Pelodiscus sinensis ENSPSIG00000009401 I
CREBL2 Pan troglodytes ENSPTRG00000004705 I
CREBL2 Pteropus vampyrus ENSPVAG00000002635 I
Crebl2 Rattus norvegicus ENSRNOG00000007115 I
ENSSARG00000000399 Sorex araneus ENSSARG00000000399 I
ENSSHAG00000012055 Sarcophilus harrisii ENSSHAG00000012055 I
ENSSTOG00000012351 Ictidomys tridecemlineatus ENSSTOG00000012351 I
CREBL2 Tupaia belangeri ENSTBEG00000010710 I
CREBL2 Taeniopygia guttata ENSTGUG00000012705 I
crebl2 Tetraodon nigroviridis ENSTNIG00000003356 I
crebl2 Takifugu rubripes ENSTRUG00000003298 I
CREBL2 Tursiops truncatus ENSTTRG00000015032 I
CREBL2 Vicugna pacos ENSVPAG00000004644 I
ENSXMAG00000002733 Xiphophorus maculatus ENSXMAG00000002733 I
GA15016 Drosophila pseudoobscura FBgn0075041 I
GF15758 Drosophila ananassae FBgn0092782 I
GG10098 Drosophila erecta FBgn0102410 I
GH13018 Drosophila grimshawi FBgn0120496 I
GI18265 Drosophila mojavensis FBgn0141004 I
GL19008 Drosophila persimilis FBgn0156609 I
GM18070 Drosophila sechellia FBgn0172977 I
GD23670 Drosophila simulans FBgn0195047 I
GJ17525 Drosophila virilis FBgn0204695 I
GK23539 Drosophila willistoni FBgn0225501 I
GE18912 Drosophila yakuba FBgn0236286 I
GB55635 Apis mellifera GB55635 I
HMEL004784 Heliconius melpomene HMEL004784 I
ISCW012752 Ixodes scapularis ISCW012752 I
KGM_09246 Danaus plexippus KGM_09246 I
L798_15162 Zootermopsis nevadensis L798_15162 I
LotgiG59424 Lottia gigantea LotgiG59424 I
NEMVEDRAFT_v1g39436 Nematostella vectensis NEMVEDRAFT_v1g39436 I
PHUM516220 Pediculus humanus PHUM516220 I
RPRC008087 Rhodnius prolixus RPRC008087 I
SMAR010609 Strigamia maritima SMAR010609 I
TC012882 Tribolium castaneum TC012882 I
tetur01g05560 Tetranychus urticae tetur01g05560 I
YQE_12440 Dendroctonus ponderosae YQE_12440 I
Aan_R002649 Calypte anna Aan_R002649 I
Afo_R011193 Aptenodytes forsteri Afo_R011193 I
Alligator_sinensis_CCG021184.1 Alligator sinensis Alligator_sinensis_CCG021184.1 I
Brh_R010115 Buceros rhinoceros Brh_R010115 I
Cmyd_10012597 Chelonia mydas Cmyd_10012597 I
ENSP00000228865-D1 Bos grunniens ENSP00000228865-D1 I
ENSP00000228865 Macaca fascicularis ENSP00000228865 I
Gfo_R000347 Geospiza fortis Gfo_R000347 I
Myotis_brandtii_CREBL2_10031479 Myotis brandtii Myotis_brandtii_CREBL2_10031479 I
Pvit_13344 Pogona vitticeps Pvit_13344 I
Tal_R009035 Tyto alba Tal_R009035 I
fgenesh2_pg.scaffold_155000104 Branchiostoma floridae fgenesh2_pg.scaffold_155000104 I
Ocbimv22011426m.g Octopus bimaculoides Ocbimv22011426m.g I
Sakowv30009524m.g Saccoglossus kowalevskii Sakowv30009524m.g I
LCUP013291 Lucilia cuprina LCUP013291 I
crebl2 Xenopus tropicalis XB-GENE-940117 I
AALB001171 Anopheles albimanus AALB001171 I
AARA010836 Anopheles arabiensis AARA010836 I
AATE008880 Anopheles atroparvus AATE008880 I
ACOM028166 Anopheles coluzzii ACOM028166 I
ACUA008740 Anopheles culicifacies ACUA008740 I
ADIR004909 Anopheles dirus ADIR004909 I
AFAF011345 Anopheles farauti AFAF011345 I
AFUN010381 Anopheles funestus AFUN010381 I
AMEC006264 Anopheles melas AMEC006264 I
AMEM009899 Anopheles merus AMEM009899 I
AMIN001400 Anopheles minimus AMIN001400 I
AQUA005286 Anopheles quadriannulatus AQUA005286 I
ASIS000055 Anopheles sinensis ASIS000055 I
ASTEI094952 Anopheles stephensi ASTEI094952 I
BGLB010118 Biomphalaria glabrata BGLB010118 I
LLOJ001356 Lutzomyia longipalpis LLOJ001356 I
MDOA012994 Musca domestica MDOA012994 I
MDOA014401 Musca domestica MDOA014401 I
PPAI006023 Phlebotomus papatasi PPAI006023 I