SVUK_0001245401 (Strongylus vulgaris)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 SVUK_0001245401 T236615_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VSX1
M03087_2.00 		Homo sapiens
YTAATTAN
NTAATTAR		 SELEX
Jolma et al.(2013)
VSX1_1 		0.811 0.587
VSX1
M03088_2.00 		Homo sapiens
NNYAATTRRBN
NVYYAATTRNN		 SELEX
Jolma et al.(2013)
VSX1_2 		0.811 0.587
VSX1
M04941_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX 		0.811 0.587
VSX1
M04944_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX 		0.811 0.587
VSX1
M05869_2.00 		Homo sapiens
DGCTAATTAN
NTAATTAGCH		 SMiLE-seq
Isakova et al.(2017)
VSX1 		0.811 0.587
VSX1
M04942_2.00 		Homo sapiens
NTAAYGMN
NKCRTTAN		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1 		0.811 0.587
VSX1
M04943_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2 		0.811 0.587
VSX1
M04945_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1 		0.811 0.587
VSX1
M04946_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2 		0.811 0.587
VAX1
M03168_2.00 		Homo sapiens
YTAATKAN
NTMATTAR		 SELEX
Jolma et al.(2013)
VAX1_1 		0.718 0.348
VAX1
M05182_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX 		0.718 0.348
VAX1
M05183_2.00 		Homo sapiens
BTMATKRN
NYMATKAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX 		0.718 0.348
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SVUK_0001245401-mRNA-1 Homeodomain 54 99

Links

Other Homeodomain family TFs
Other Strongylus vulgaris TFs

1239 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TRIATDRAFT_164285 Trichoderma atroviride TRIATDRAFT_164285 N
Pc22g17120 Penicillium chrysogenum Pc22g17120 N
estExt_Genewise1.C_42033 Cryphonectria parasitica estExt_Genewise1.C_42033 N
VDBG_09138 Verticillium alfalfae VDBG_09138 N
VDAG_07288 Verticillium dahliae VDAG_07288 N
TRIVIDRAFT_133633 Trichoderma virens TRIVIDRAFT_133633 N
TRIVIDRAFT_125398 Trichoderma virens TRIVIDRAFT_125398 N
TRIREDRAFT_109328 Trichoderma reesei TRIREDRAFT_109328 N
TRIREDRAFT_104104 Trichoderma reesei TRIREDRAFT_104104 N
VDBG_09138 Verticillium albo atrum VDBG_09138 N
PCH_Pc22g17120 Penicillium rubens PCH_Pc22g17120 N
MGU_09181 Metarhizium guizhouense MGU_09181 N
MBR_00024 Metarhizium brunneum MBR_00024 N
MAJ_09002 Metarhizium majus MAJ_09002 N
MAC_07656 Metarhizium acridum MAC_07656 N
FOXG_14560 Fusarium oxysporum FOXG_14560 N
CCM_07676 Cordyceps militaris CCM_07676 N