CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

SVUK_0001874801 *(Strongylus vulgaris)* Homeodomain
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00046 (Homeobox)	IPR001356	SVUK_0001874801	T236630_2.00	WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
VSX1 M03087_2.00	Homo sapiens	YTAATTAN	NTAATTAR	SELEX Jolma et al.(2013) VSX1_1	0.600	0.468
VSX1 M03088_2.00	Homo sapiens	NNYAATTRRBN	NVYYAATTRNN	SELEX Jolma et al.(2013) VSX1_2	0.600	0.468
VSX1 M04941_2.00	Homo sapiens	YYAATTRN	NYAATTRR	SELEX Yin et al.(2017) VSX1_eDBD_HT-SELEX	0.600	0.468
VSX1 M04944_2.00	Homo sapiens	NTAATTRS	SYAATTAN	SELEX Yin et al.(2017) VSX1_FL_HT-SELEX	0.600	0.468
VSX1 M05869_2.00	Homo sapiens	DGCTAATTAN	NTAATTAGCH	SMiLE-seq Isakova et al.(2017) VSX1	0.600	0.468
VSX1 M04942_2.00	Homo sapiens	NTAAYGMN	NKCRTTAN	SELEX Yin et al.(2017) VSX1_eDBD_Methyl-HT-SELEX_1	0.600	0.468
VSX1 M04943_2.00	Homo sapiens	YYAATTRN	NYAATTRR	SELEX Yin et al.(2017) VSX1_eDBD_Methyl-HT-SELEX_2	0.600	0.468
VSX1 M04945_2.00	Homo sapiens	NTAATTRG	CYAATTAN	SELEX Yin et al.(2017) VSX1_FL_Methyl-HT-SELEX_1	0.600	0.468
VSX1 M04946_2.00	Homo sapiens	NTAAYGAN	NTCRTTAN	SELEX Yin et al.(2017) VSX1_FL_Methyl-HT-SELEX_2	0.600	0.468
For this family, TFs with SR scores > 0.599* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
SVUK_0001874801-mRNA-1	Homeodomain	21	67	RCGRSSFSQEQLELLESSFTKEPYPSIAQRLELVKKTQLPEARIQVL

Links
Other Homeodomain family TFs
Other *Strongylus vulgaris* TFs