TRE_0000553301 (Trichobilharzia regenti)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 TRE_0000553301 T236987_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SIX5
M08208_2.00 		Homo sapiens
GARWTGTAGT
ACTACAWYTC		 ChIP-seq
Contrino et al.(2012)
Mv121 		0.728 0.566
SIX5
M08209_2.00 		Homo sapiens
GGAGTTGT
ACAACTCC		 ChIP-seq
Contrino et al.(2012)
Mv123 		0.728 0.566
SIX5
M10738_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX5_01 		0.728 0.566
SIX5
M10739_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX5_02 		0.728 0.566
Six4
M00461_2.00 		Mus musculus
NNKABMHNN
NNDKVTMNN		 PBM
Berger et al.(2008)
Six4_2860 		0.727 0.585
SIX4
M04939_2.00 		Homo sapiens
NVYGATACVB
VBGTATCRBN		 SELEX
Yin et al.(2017)
SIX4_eDBD_HT-SELEX 		0.727 0.585
Six4
M09198_2.00 		Mus musculus
DGDAABHNSASNNN
NNNSTSNDVTTHCH		 Misc
Kulakovskiy et al.(2013)
SIX4_MOUSE.H11MO.0.C 		0.727 0.585
SIX4
M10646_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX4_Q3 		0.727 0.585
SIX4
M04940_2.00 		Homo sapiens
NBGTAWCRHN
NDYGWTACVN		 SELEX
Yin et al.(2017)
SIX4_eDBD_Methyl-HT-SELEX 		0.727 0.585
Six4
M00563_2.00 		Drosophila melanogaster
NNDANMHNN
NNDKNTHNN		 PBM
Busser et al.(2012a)
Six4 		0.727 0.566
Six4
M06530_2.00 		Drosophila melanogaster
TGABAC
GTVTCA		 B1H
Mathelier et al.(2014)
MA0204.1 		0.727 0.566
Six4
M06334_2.00 		Drosophila melanogaster
WDDTGABAC
GTVTCAHHW		 B1H
Zhu et al.(2011)
Six4_Cell_FBgn0027364 		0.727 0.566
Six4
M06335_2.00 		Drosophila melanogaster
NTGAKACB
VGTMTCAN		 B1H
Zhu et al.(2011)
Six4_SOLEXA_2_FBgn0027364 		0.727 0.566
Six4
M06336_2.00 		Drosophila melanogaster
NNNTGABA
TVTCANNN		 B1H
Zhu et al.(2011)
Six4_SOLEXA_FBgn0027364 		0.727 0.566
Six2
M00425_2.00 		Mus musculus
NNAYMYNN
NNRKRTNN		 PBM
Berger et al.(2008)
Six2_2307 		0.634 0.585
Six1
M00512_2.00 		Mus musculus
NNDATMYNNN
NNNRKATHNN		 PBM
Berger et al.(2008)
Six1_0935 		0.634 0.585
SIX1
M05094_2.00 		Homo sapiens
NNYGATACVB
VBGTATCRNN		 SELEX
Yin et al.(2017)
SIX1_eDBD_HT-SELEX 		0.634 0.585
SIX1
M05096_2.00 		Homo sapiens
NNYGATAYVB
VBRTATCRNN		 SELEX
Yin et al.(2017)
SIX1_FL_HT-SELEX 		0.634 0.585
SIX2
M05285_2.00 		Homo sapiens
NNYGATACSB
VSGTATCRNN		 SELEX
Yin et al.(2017)
SIX2_eDBD_HT-SELEX 		0.634 0.585
SIX2
M05287_2.00 		Homo sapiens
NSGTRWCRYN
NRYGWYACSN		 SELEX
Yin et al.(2017)
SIX2_FL_HT-SELEX 		0.634 0.585
SIX1
M08130_2.00 		Homo sapiens
GWAACCTGANM
KNTCAGGTTWC		 ChIP-seq
Mathelier et al.(2014)
MA1118.1 		0.634 0.585
SIX2
M08133_2.00 		Homo sapiens
NNNTGWAACCTGAKMH
DKMTCAGGTTWCANNN		 ChIP-seq
Mathelier et al.(2014)
MA1119.1 		0.634 0.585
SIX1
M09142_2.00 		Homo sapiens
DGWAAYHTGABMYN
NRKVTCADRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX1_HUMAN.H11MO.0.A 		0.634 0.585
SIX2
M09157_2.00 		Homo sapiens
DGWAAYHHGABMH
DKVTCDDRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX2_HUMAN.H11MO.0.A 		0.634 0.585
Six2
M09185_2.00 		Mus musculus
DGWAAYHYRABMYB
VRKVTYRDRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX2_MOUSE.H11MO.0.A 		0.634 0.585
Six1
M09579_2.00 		Mus musculus
GWAAYHTGABMH
DKVTCADRTTWC		 Misc
Heinz et al.(2010)
Myoblast-Six1_GSE20150 		0.634 0.585
SIX1
M10684_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX1_Q3_01 		0.634 0.585
SIX1
M10685_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX1_Q3 		0.634 0.585
SIX1
M05095_2.00 		Homo sapiens
NNYGATABNB
VNVTATCRNN		 SELEX
Yin et al.(2017)
SIX1_eDBD_Methyl-HT-SELEX 		0.634 0.585
SIX1
M05097_2.00 		Homo sapiens
NNYGATAYSB
VSRTATCRNN		 SELEX
Yin et al.(2017)
SIX1_FL_Methyl-HT-SELEX 		0.634 0.585
SIX2
M05286_2.00 		Homo sapiens
NBRTATCRNN
NNYGATAYVN		 SELEX
Yin et al.(2017)
SIX2_eDBD_Methyl-HT-SELEX 		0.634 0.585
SIX2
M05288_2.00 		Homo sapiens
VBRTAWCRNN
NNYGWTAYVB		 SELEX
Yin et al.(2017)
SIX2_FL_Methyl-HT-SELEX 		0.634 0.585
so
M02117_2.00 		Drosophila melanogaster
NDATMYNNN
NNNRKATHN		 PBM
Weirauch et al.(2014)
pTH5690 		0.634 0.566
so
M03800_2.00 		Drosophila melanogaster
NYGATAYB
VRTATCRN		 SELEX
Nitta et al.(2015)
so_1 		0.634 0.566
so
M03801_2.00 		Drosophila melanogaster
YKATAYNNNYGATAY
RTATCRNNNRTATMR		 SELEX
Nitta et al.(2015)
so_2 		0.634 0.566
so
M03802_2.00 		Drosophila melanogaster
YGATACGTATCR
YGATACGTATCR		 SELEX
Nitta et al.(2015)
so_3 		0.634 0.566
so
M03803_2.00 		Drosophila melanogaster
RTATCRYGATAC
GTATCRYGATAY		 SELEX
Nitta et al.(2015)
so_4 		0.634 0.566
so
M06497_2.00 		Drosophila melanogaster
TGATAC
GTATCA		 B1H
Mathelier et al.(2014)
MA0246.1 		0.634 0.566
so
M06268_2.00 		Drosophila melanogaster
NRTGATA
TATCAYN		 B1H
Zhu et al.(2011)
So_Cell_FBgn0003460 		0.634 0.566
so
M06269_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
So_SOLEXA_FBgn0003460 		0.634 0.566
ceh-34
M00672_2.00 		Caenorhabditis elegans
NNNRDAWNNN
NNNWTHYNNN		 PBM
Narasimhan et al.(2015)
pTH9708 		0.604 0.509
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
TRE_0000553301-mRNA-1 Homeodomain 159 211

Links

Other Homeodomain family TFs
Other Trichobilharzia regenti TFs

529 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ss Drosophila melanogaster FBgn0003513 D
AMIN001133 Anopheles minimus AMIN001133 I
CLEC009101 Cimex lectularius CLEC009101 I
LCUP007701 Lucilia cuprina LCUP007701 I
LDEC011571 Leptinotarsa decemlineata LDEC011571 I
AALB008770 Anopheles albimanus AALB008770 I
AARA007184 Anopheles arabiensis AARA007184 I
AATE012309 Anopheles atroparvus AATE012309 I
ACUA004353 Anopheles culicifacies ACUA004353 I
ADIR004072 Anopheles dirus ADIR004072 I
AEPI011123 Anopheles epiroticus AEPI011123 I
AFAF003678 Anopheles farauti AFAF003678 I
AFUN003146 Anopheles funestus AFUN003146 I
Hsal_00743--XP_394737.3_APIME Harpegnathos saltator Hsal_00743--XP_394737.3_APIME I
AQUA003723 Anopheles quadriannulatus AQUA003723 I
MDOA012868 Musca domestica MDOA012868 I
DILT_0000966101 Diphyllobothrium latum DILT_0000966101 I
ECANG7_00235 Echinococcus canadensis ECANG7_00235 I
ECPE_0000485601 Echinostoma caproni ECPE_0000485601 I
EmuJ_000434100 Echinococcus multilocularis EmuJ_000434100 I
HmN_000855200 Hymenolepis microstoma HmN_000855200 I
HNAJ_0001000501 Hymenolepis nana HNAJ_0001000501 I
TsM_000000500 Taenia solium TsM_000000500 I
TTAC_0000255601 Hydatigera taeniaeformis TTAC_0000255601 I
GE26316 Drosophila yakuba FBgn0243346 I
ACEP12067 Atta cephalotes ACEP12067 I
AGAP010259 Anopheles gambiae AGAP010259 I
GA20013 Drosophila pseudoobscura FBgn0080009 I
GF16518 Drosophila ananassae FBgn0093539 I
GG19993 Drosophila erecta FBgn0112192 I
GH18248 Drosophila grimshawi FBgn0125716 I
GI23647 Drosophila mojavensis FBgn0146373 I
GL22243 Drosophila persimilis FBgn0159835 I
GJ23490 Drosophila virilis FBgn0210588 I
GK13504 Drosophila willistoni FBgn0215512 I
AAEL011825 Aedes aegypti AAEL011825 I
GB54493 Apis mellifera GB54493 I
HMEL007610 Heliconius melpomene HMEL007610 I
ISCW019892 Ixodes scapularis ISCW019892 I
L798_12532 Zootermopsis nevadensis L798_12532 I
MCINX002971 Melitaea cinxia MCINX002971 I
NV14135 Nasonia vitripennis NV14135 I
PHUM298050 Pediculus humanus PHUM298050 I
RPRC012076 Rhodnius prolixus RPRC012076 I
SMAR001354 Strigamia maritima SMAR001354 I
TC011105 Tribolium castaneum TC011105 I