gene30146-v1.0-hybrid (Fragaria vesca)
HSF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00447 (HSF_DNA-bind) IPR000232 gene30146-v1.0-hybrid T243164_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HSFA4A
M06947_2.00 		Arabidopsis thaliana
NNNRGAABBTTCTAGAANN
NNTTCTAGAAVVTTCYNNN		 Dap-seq
OMalley et al.(2016)
HSF21_col_a 		0.452 0.667
HSFB4
M06936_2.00 		Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
HSFB4_col_a 		0.437 0.678
HSFA6B
M06941_2.00 		Arabidopsis thaliana
RGAASNTTCTAGA
TCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
HSFA6B_colamp_a 		0.436 0.690
HSFA6B
M06942_2.00 		Arabidopsis thaliana
RGAABNTTCTRGAAN
NTTCYAGAANVTTCY		 Dap-seq
OMalley et al.(2016)
HSFA6B_col 		0.436 0.690
HSFC1
M00868_2.00 		Arabidopsis thaliana
NDTCBNNN
NNNVGAHN		 PBM
Franco-Zorrilla et al.(2014)
HSFC1 		0.434 0.667
HSFC1
M06943_2.00 		Arabidopsis thaliana
GAASNTTCTAG
CTAGAANSTTC		 Dap-seq
OMalley et al.(2016)
HSFC1_col_a 		0.434 0.667
HSFC1
M06944_2.00 		Arabidopsis thaliana
RGAASNTTCTAGAANVW
WBNTTCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
HSFC1_colamp_a 		0.434 0.667
HSFA1E
M06939_2.00 		Arabidopsis thaliana
RGAANNTTCTAGA
TCTAGAANNTTCY		 Dap-seq
OMalley et al.(2016)
HSFA1E_col_a 		0.429 0.678
HSFA1E
M06940_2.00 		Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
HSFA1E_colamp_a 		0.429 0.678
HSFA1B
M06948_2.00 		Arabidopsis thaliana
GAANNTTCTAGA
TCTAGAANNTTC		 Dap-seq
OMalley et al.(2016)
HSF3_col_a 		0.422 0.690
HSFA1B
M06949_2.00 		Arabidopsis thaliana
TTCYRG
CYRGAA		 Dap-seq
OMalley et al.(2016)
HSF3_colamp_a 		0.422 0.690
HSFB2B
M06945_2.00 		Arabidopsis thaliana
RGAANNTTCTAGAA
TTCTAGAANNTTCY		 Dap-seq
OMalley et al.(2016)
HSF7_col_a 		0.418 0.632
HSFB2B
M06946_2.00 		Arabidopsis thaliana
RGAANNTTCTAGAA
TTCTAGAANNTTCY		 Dap-seq
OMalley et al.(2016)
HSF7_colamp_a 		0.418 0.632
HSFB2A
M00869_2.00 		Arabidopsis thaliana
NNNNNTTCB
VGAANNNNN		 PBM
Franco-Zorrilla et al.(2014)
HSFB2A 		0.417 0.621
HSFB2A
M06952_2.00 		Arabidopsis thaliana
GAANNTTCYAGA
TCTRGAANNTTC		 Dap-seq
OMalley et al.(2016)
HSF6_col_a 		0.417 0.621
HSFA6A
M06950_2.00 		Arabidopsis thaliana
GAASNTTCTAGAANNW
WNNTTCTAGAANSTTC		 Dap-seq
OMalley et al.(2016)
HSFA6A_col_a 		0.405 0.667
HSFA6A
M06951_2.00 		Arabidopsis thaliana
GAASNTTCTAGAA
TTCTAGAANSTTC		 Dap-seq
OMalley et al.(2016)
HSFA6A_colamp_a 		0.405 0.667
HSFB3
M06937_2.00 		Arabidopsis thaliana
RRAANMWTCTAGAAV
BTTCTAGAWKNTTYY		 Dap-seq
OMalley et al.(2016)
HSFB3_col_a 		0.397 0.621
HSFB3
M06938_2.00 		Arabidopsis thaliana
AABSTTCTAGAAN
NTTCTAGAASVTT		 Dap-seq
OMalley et al.(2016)
HSFB3_colamp_a 		0.397 0.621
For this family, TFs with SR scores > 0.318 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna30146.1-v1.0-hybrid HSF 32 127

Links

Other HSF family TFs
Other Fragaria vesca TFs

1487 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
DUX3_HUMAN Homo sapiens DUX3_HUMAN D
DUX1_HUMAN Homo sapiens DUX1_HUMAN D
DUX4 Homo sapiens ENSG00000260596 D
ENSMMUP00000019302 Macaca fascicularis ENSMMUP00000019302 I
ENSBTAP00000049813-D1 Bos grunniens ENSBTAP00000049813-D1 I
ENSTSYG00000019549 Tarsius syrichta ENSTSYG00000019549 I
ENSTSYG00000019463 Tarsius syrichta ENSTSYG00000019463 I
ENSTSYG00000019459 Tarsius syrichta ENSTSYG00000019459 I
ENSTSYG00000019450 Tarsius syrichta ENSTSYG00000019450 I
ENSTSYG00000019440 Tarsius syrichta ENSTSYG00000019440 I
ENSTSYG00000013427 Tarsius syrichta ENSTSYG00000013427 I
ENSTSYG00000006219 Tarsius syrichta ENSTSYG00000006219 I
ENSPPYG00000015280 Pongo abelii ENSPPYG00000015280 I
ENSOARG00000010766 Ovis aries ENSOARG00000010766 I
ENSNLEG00000016146 Nomascus leucogenys ENSNLEG00000016146 I
ENSMMUG00000017616 Macaca mulatta ENSMMUG00000017616 I
ENSMMUG00000016525 Macaca mulatta ENSMMUG00000016525 I
ENSMMUG00000014712 Macaca mulatta ENSMMUG00000014712 I
ENSGGOG00000023520 Gorilla gorilla ENSGGOG00000023520 I
ENSGGOG00000013031 Gorilla gorilla ENSGGOG00000013031 I
ENSCSAG00000019478 Chlorocebus sabaeus ENSCSAG00000019478 I
ENSCJAG00000023408 Callithrix jacchus ENSCJAG00000023408 I
ENSLAFG00000031588 Loxodonta africana ENSLAFG00000031588 N
ENSLAFG00000027527 Loxodonta africana ENSLAFG00000027527 N