irf4b (Gasterosteus aculeatus)
IRF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00605 (IRF) IPR001346 ENSGACG00000004966 T244089_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
IRF4
M03334_2.00 		Homo sapiens
HCGAAACCGAAACYW
WRGTTTCGGTTTCGD		 SELEX
Jolma et al.(2013)
IRF4_1 		0.933 0.933
IRF4
M05539_2.00 		Homo sapiens
NYGAAACYGAAACYN
NRGTTTCRGTTTCRN		 SELEX
Yin et al.(2017)
IRF4_FL_HT-SELEX 		0.933 0.933
IRF4
M07978_2.00 		Homo sapiens
DNDVNNGWWVTGAVWVWN
NWBWBTCABWWCNNBHNH		 ChIP-seq
Gerstein et al.(2012)
GM12878_IRF4_HudsonAlpha 		0.933 0.933
IRF4
M09235_2.00 		Homo sapiens
NDWDRRGGAASTGARAVH
DBTYTCASTTCCYYHWHN		 Misc
Kulakovskiy et al.(2013)
IRF4_HUMAN.H11MO.0.A 		0.933 0.933
IRF4
M09595_2.00 		Homo sapiens
HNYGAAASYD
HRSTTTCRND		 Misc
Heinz et al.(2010)
GM12878-IRF4_GSE32465 		0.933 0.933
IRF4
M10885_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF4_07 		0.933 0.933
IRF4
M10886_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF4_08 		0.933 0.933
IRF4
M10887_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF4_Q5_01 		0.933 0.933
IRF4
M10888_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF4_Q5 		0.933 0.933
IRF4
M10889_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF4_Q6 		0.933 0.933
IRF4
M05540_2.00 		Homo sapiens
NYGAAASYGAWASHN
NDSTWTCRSTTTCRN		 SELEX
Yin et al.(2017)
IRF4_FL_Methyl-HT-SELEX 		0.933 0.933
Irf4
M00175_2.00 		Mus musculus
NNNYGAWASN
NSTWTCRNNN		 PBM
Badis et al.(2009)
Irf4_3476 		0.924 0.924
Irf4
M09243_2.00 		Mus musculus
NDAWVVRGAASTGARAVH
DBTYTCASTTCYBBWTHN		 Misc
Kulakovskiy et al.(2013)
IRF4_MOUSE.H11MO.0.A 		0.924 0.924
IRF8
M03335_2.00 		Homo sapiens
HCGAAACYGAAACY
RGTTTCRGTTTCGD		 SELEX
Jolma et al.(2013)
IRF8_1 		0.781 0.781
IRF8
M03336_2.00 		Homo sapiens
HCGAAACCGAAACT
AGTTTCGGTTTCGD		 SELEX
Jolma et al.(2013)
IRF8_2 		0.781 0.781
IRF8
M05541_2.00 		Homo sapiens
NYGAAASYGAAASHN
NDSTTTCRSTTTCRN		 SELEX
Yin et al.(2017)
IRF8_eDBD_HT-SELEX 		0.781 0.781
IRF8
M05543_2.00 		Homo sapiens
NCGAAACYGAAACYN
NRGTTTCRGTTTCGN		 SELEX
Yin et al.(2017)
IRF8_FL_HT-SELEX 		0.781 0.781
IRF8
M09236_2.00 		Homo sapiens
NDDDRRGGAASTGAAASYNN
NNRSTTTCASTTCCYYHHHN		 Misc
Kulakovskiy et al.(2013)
IRF8_HUMAN.H11MO.0.B 		0.781 0.781
IRF8
M10890_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ICSBP_Q6 		0.781 0.781
IRF8
M10891_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF8_Q6 		0.781 0.781
IRF8
M05542_2.00 		Homo sapiens
NYGAAASYGAAASYN
NRSTTTCRSTTTCRN		 SELEX
Yin et al.(2017)
IRF8_eDBD_Methyl-HT-SELEX 		0.781 0.781
IRF8
M05544_2.00 		Homo sapiens
NYGAAASYGAAACYD
HRGTTTCRSTTTCRN		 SELEX
Yin et al.(2017)
IRF8_FL_Methyl-HT-SELEX 		0.781 0.781
Irf8
M09246_2.00 		Mus musculus
NDDDRRGGAASTGAAASYNN
NNRSTTTCASTTCCYYHHHN		 Misc
Kulakovskiy et al.(2013)
IRF8_MOUSE.H11MO.0.A 		0.771 0.771
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000006567 IRF 17 122
ENSGACP00000006570 IRF 6 111

Links

Other IRF family TFs
Other Gasterosteus aculeatus TFs

156 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
OLIG3 Homo sapiens ENSG00000177468 D 0.000
OLIG2 Homo sapiens ENSG00000205927 D 0.000
Olig2 Mus musculus ENSMUSG00000039830 D 0.000
Olig3 Mus musculus ENSMUSG00000045591 D 0.000
CapteG41307 Capitella teleta CapteG41307 I 0.000
CapteG65387 Capitella teleta CapteG65387 I 0.000
CGI_10019998 Crassostrea gigas CGI_10019998 I 0.000
CGI_10023146 Crassostrea gigas CGI_10023146 I 0.000
ENSAMEG00000015013 Ailuropoda melanoleuca ENSAMEG00000015013 I 0.000
ENSAMEG00000019633 Ailuropoda melanoleuca ENSAMEG00000019633 I 0.000
ENSAMXG00000026066 Astyanax mexicanus ENSAMXG00000026066 I 0.000
ENSAMXG00000026284 Astyanax mexicanus ENSAMXG00000026284 I 0.000
ENSAPLG00000002295 Anas platyrhynchos ENSAPLG00000002295 I 0.000
OLIG3 Bos taurus ENSBTAG00000008749 I 0.000
OLIG3 Canis familiaris ENSCAFG00000000265 I 0.000
OLIG2 Canis familiaris ENSCAFG00000028529 I 0.000
OLIG3 Choloepus hoffmanni ENSCHOG00000005165 I 0.000
OLIG2 Callithrix jacchus ENSCJAG00000009439 I 0.000
OLIG3 Cavia porcellus ENSCPOG00000007516 I 0.000
OLIG2 Cavia porcellus ENSCPOG00000011590 I 0.000
ENSCSAG00000000185 Chlorocebus sabaeus ENSCSAG00000000185 I 0.000
ENSCSAG00000018687 Chlorocebus sabaeus ENSCSAG00000018687 I 0.000
olig2 Danio rerio ENSDARG00000040946 I 0.000
OLIG3 Dasypus novemcinctus ENSDNOG00000042405 I 0.000
OLIG2 Dasypus novemcinctus ENSDNOG00000047420 I 0.000
ENSDORG00000006743 Dipodomys ordii ENSDORG00000006743 I 0.000
Olig3 Dipodomys ordii ENSDORG00000013033 I 0.000
OLIG3 Echinops telfairi ENSETEG00000004562 I 0.000
ENSFALG00000012862 Ficedula albicollis ENSFALG00000012862 I 0.000
OLIG3 Felis catus ENSFCAG00000030246 I 0.000
olig2 Gasterosteus aculeatus ENSGACG00000002152 I 0.000
OLIG3 Gasterosteus aculeatus ENSGACG00000010412 I 0.000
OLIG3 Gallus gallus ENSGALG00000013862 I 0.000
ENSGALG00000027381 Gallus gallus ENSGALG00000027381 I 0.000
OLIG3 Gorilla gorilla ENSGGOG00000001516 I 0.000
OLIG2 Gorilla gorilla ENSGGOG00000008780 I 0.000
ENSGMOG00000018006 Gadus morhua ENSGMOG00000018006 I 0.000
ENSGMOG00000018584 Gadus morhua ENSGMOG00000018584 I 0.000
ENSLACG00000005047 Latimeria chalumnae ENSLACG00000005047 I 0.000
ENSLACG00000005481 Latimeria chalumnae ENSLACG00000005481 I 0.000
OLIG3 Loxodonta africana ENSLAFG00000005655 I 0.000
OLIG2 Loxodonta africana ENSLAFG00000028347 I 0.000
ENSLOCG00000017350 Lepisosteus oculatus ENSLOCG00000017350 I 0.000
ENSLOCG00000017506 Lepisosteus oculatus ENSLOCG00000017506 I 0.000
ENSMEUG00000002914 Macropus eugenii ENSMEUG00000002914 I 0.000
ENSMICG00000004313 Microcebus murinus ENSMICG00000004313 I 0.000
OLIG3 Myotis lucifugus ENSMLUG00000026705 I 0.000
OLIG2 Macaca mulatta ENSMMUG00000017652 I 0.000
ENSMMUG00000029441 Macaca mulatta ENSMMUG00000029441 I 0.000
OLIG3 Monodelphis domestica ENSMODG00000017418 I 0.000
OLIG2 Monodelphis domestica ENSMODG00000025338 I 0.000
ENSMPUG00000001227 Mustela putorius furo ENSMPUG00000001227 I 0.000
ENSMPUG00000018873 Mustela putorius furo ENSMPUG00000018873 I 0.000
ENSNLEG00000019305 Nomascus leucogenys ENSNLEG00000019305 I 0.000
OLIG3 Ornithorhynchus anatinus ENSOANG00000014796 I 0.000
OLIG3 Oryctolagus cuniculus ENSOCUG00000017289 I 0.000
OLIG3 Otolemur garnettii ENSOGAG00000011977 I 0.000
OLIG2 Otolemur garnettii ENSOGAG00000026818 I 0.000
ENSONIG00000017079 Oreochromis niloticus ENSONIG00000017079 I 0.000
ENSONIG00000020727 Oreochromis niloticus ENSONIG00000020727 I 0.000
OLIG3 Ochotona princeps ENSOPRG00000003267 I 0.000
olig2 Oryzias latipes ENSORLG00000010211 I 0.000
ENSPANG00000006465 Papio anubis ENSPANG00000006465 I 0.000
ENSPANG00000007664 Papio anubis ENSPANG00000007664 I 0.000
OLIG3 Procavia capensis ENSPCAG00000002488 I 0.000
OLIG2 Procavia capensis ENSPCAG00000005657 I 0.000
ENSPFOG00000004604 Poecilia formosa ENSPFOG00000004604 I 0.000
ENSPFOG00000015805 Poecilia formosa ENSPFOG00000015805 I 0.000
ENSPFOG00000019968 Poecilia formosa ENSPFOG00000019968 I 0.000
ENSPPYG00000011369 Pongo abelii ENSPPYG00000011369 I 0.000
ENSPPYG00000017041 Pongo abelii ENSPPYG00000017041 I 0.000
ENSPSIG00000001778 Pelodiscus sinensis ENSPSIG00000001778 I 0.000
ENSPSIG00000001988 Pelodiscus sinensis ENSPSIG00000001988 I 0.000
OLIG2 Pan troglodytes ENSPTRG00000013863 I 0.000
OLIG3 Pan troglodytes ENSPTRG00000018643 I 0.000
Olig3 Rattus norvegicus ENSRNOG00000012057 I 0.000
Olig2 Rattus norvegicus ENSRNOG00000028658 I 0.000
ENSSHAG00000007183 Sarcophilus harrisii ENSSHAG00000007183 I 0.000
OLIG3 Sus scrofa ENSSSCG00000004155 I 0.000
ENSSTOG00000020214 Ictidomys tridecemlineatus ENSSTOG00000020214 I 0.000
ENSSTOG00000020899 Ictidomys tridecemlineatus ENSSTOG00000020899 I 0.000
OLIG3 Tupaia belangeri ENSTBEG00000014468 I 0.000
OLIG3 Taeniopygia guttata ENSTGUG00000010892 I 0.000
olig2 Tetraodon nigroviridis ENSTNIG00000000234 I 0.000
olig2 Tetraodon nigroviridis ENSTNIG00000003641 I 0.000
OLIG3 Tetraodon nigroviridis ENSTNIG00000017004 I 0.000
olig2 Takifugu rubripes ENSTRUG00000014944 I 0.000
ENSXMAG00000001116 Xiphophorus maculatus ENSXMAG00000001116 I 0.000
ENSXMAG00000018245 Xiphophorus maculatus ENSXMAG00000018245 I 0.000
LotgiG70673 Lottia gigantea LotgiG70673 I 0.000
Aan_R009789 Calypte anna Aan_R009789 I 0.000
Afo_R014889 Aptenodytes forsteri Afo_R014889 I 0.000
Alligator_sinensis_CCG012594.1 Alligator sinensis Alligator_sinensis_CCG012594.1 I 0.000
Brh_R007937 Buceros rhinoceros Brh_R007937 I 0.000
Cmyd_10005462 Chelonia mydas Cmyd_10005462 I 0.000
Cmyd_10011949 Chelonia mydas Cmyd_10011949 I 0.000
ENSBTAP00000021340-D1 Bos grunniens ENSBTAP00000021340-D1 I 0.000
ENSP00000356708-D1 Bos grunniens ENSP00000356708-D1 I 0.000
ENSP00000356708 Macaca fascicularis ENSP00000356708 I 0.000
Gfo_R003786 Geospiza fortis Gfo_R003786 I 0.000
Myotis_brandtii_OLIG3_10035715 Myotis brandtii Myotis_brandtii_OLIG3_10035715 I 0.000
Ogr17936 Ophisaurus gracilis Ogr17936 I 0.000
Pvit_10685 Pogona vitticeps Pvit_10685 I 0.000
Pvit_17282 Pogona vitticeps Pvit_17282 I 0.000
Ocbimv22001042m.g Octopus bimaculoides Ocbimv22001042m.g I 0.000
Sakowv30018772m.g Saccoglossus kowalevskii Sakowv30018772m.g I 0.000
olig3 Xenopus tropicalis XB-GENE-919789 I 0.000
XP_002938491 Xenopus tropicalis XP_002938491 I 0.000
BGLB010755 Biomphalaria glabrata BGLB010755 I 0.000
D915_09810 Fasciola hepatica D915_09810 I 0.000
ECPE_0001595001 Echinostoma caproni ECPE_0001595001 I 0.000