Alligator_sinensis_CCG011335.1 (Alligator sinensis)
IRF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00605 (IRF) IPR001346 Alligator_sinensis_CCG011335.1 T244512_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
IRF2
M05545_2.00 		Homo sapiens
NGAAAVYGAAAS
STTTCRBTTTCN		 SELEX
Yin et al.(2017)
IRF2_FL_HT-SELEX 		0.839 0.839
IRF2
M02691_2.00 		Homo sapiens
SGAAAGYGAAASYNWWHH
DDWWNRSTTTCRCTTTCS		 SELEX
Mathelier et al.(2014)
MA0051.1 		0.839 0.839
IRF2
M09237_2.00 		Homo sapiens
NRAANNGAAASYGAAASYRV
BYRSTTTCRSTTTCNNTTYN		 Misc
Kulakovskiy et al.(2013)
IRF2_HUMAN.H11MO.0.A 		0.839 0.839
IRF2
M09596_2.00 		Homo sapiens
NRAAVNRRAASB
VSTTYYNBTTYN		 Misc
Heinz et al.(2010)
Erythroblas-IRF2_GSE36985 		0.839 0.839
IRF2
M10892_2.00 		Homo sapiens
GAAAAGYGAAASY
RSTTTCRCTTTTC		 Transfac
Matys et al.(2006)
V$IRF2_01 		0.839 0.839
IRF2
M10893_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF2_Q6 		0.839 0.839
IRF2
M05546_2.00 		Homo sapiens
NGAAASYGAAAS
STTTCRSTTTCN		 SELEX
Yin et al.(2017)
IRF2_FL_Methyl-HT-SELEX 		0.839 0.839
Irf2
M00805_2.00 		Mus musculus
NDWNHGAAAV
BTTTCDNWHN		 PBM
Weirauch et al.(2013)
pTH2835 		0.804 0.804
Irf2
M09245_2.00 		Mus musculus
NRAANNGAAASYGAAASYRV
BYRSTTTCRSTTTCNNTTYN		 Misc
Kulakovskiy et al.(2013)
IRF2_MOUSE.H11MO.0.B 		0.804 0.804
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG011335.1 IRF 9 64

Links

Other IRF family TFs
Other Alligator sinensis TFs

7 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
HMPREF1624_05763 Sporothrix schenckii HMPREF1624_05763 N
TRV_00390 Trichophyton verrucosum TRV_00390 N
TESG_06706 Trichophyton tonsurans TESG_06706 N
TEQG_05350 Trichophyton equinum TEQG_05350 N
SPBR_00320 Sporothrix brasiliensis SPBR_00320 N
PFICI_13552 Pestalotiopsis fici PFICI_13552 N
PDE_08862 Penicillium oxalicum PDE_08862 N
OIDMADRAFT_65474 Oidiodendron maius OIDMADRAFT_65474 N
MGYG_06592 Microsporum gypseum MGYG_06592 N
MCYG_03602 Arthroderma otae MCYG_03602 N
MCYG_03602 Microsporum canis MCYG_03602 N
H105_00213 Trichophyton soudanense H105_00213 N
H102_00219 Trichophyton rubrum H102_00219 N
H101_01387 Trichophyton interdigitale H101_01387 N
EURHEDRAFT_409592 Aspergillus ruber EURHEDRAFT_409592 N
NFIA_112260 Neosartorya fischeri CADNFIAG00010688 N
CADAORAG00000829 Aspergillus oryzae CADAORAG00000829 N
CADAFLAG00003024 Aspergillus flavus CADAFLAG00003024 N
AUEXF2481DRAFT_326348 Aureobasidium subglaciale AUEXF2481DRAFT_326348 N
ARB_00534 Arthroderma benhamiae ARB_00534 N