CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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How to cite
Al_scaffold_0008_1406
(
Arabidopsis lyrata
)
LOB
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03195 (DUF260)
IPR004883
Al_scaffold_0008_1406
T244839_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Al_scaffold_0008_1406
LOB
9
94
PYSVCITRNKNCPQNCEYAKYFPYKLQCQYESANELFGTPNIIKMMRHAPEEKKQILATSIIMEGNAWTKDPISGGFGVMQKIMWK
Links
Other
LOB
family TFs
Other
Arabidopsis lyrata
TFs
4 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
LBD5
Arabidopsis thaliana
AT1G36000
N
0.826
LBD8
Arabidopsis thaliana
AT2G19510
N
0.791
fgenesh2_kg.3__3222__AT2G19510.1
Arabidopsis lyrata
fgenesh2_kg.3__3222__AT2G19510.1
N
0.791
Carubv10015980m.g
Capsella rubella
Carubv10015980m.g
N
0.709