LBD6 (Oryza indica)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 BGIOSGA004955 T244924_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD6
M06955_2.00 		Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN
NHDYCKCCGYHDHHNCCGSCG		 Dap-seq
OMalley et al.(2016)
AS2_col_a 		0.848 0.848
LOB
M06966_2.00 		Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH
DCCKCCKYHDYYDCCGCCGBN		 Dap-seq
OMalley et al.(2016)
LOB_col_a 		0.717 0.717
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
BGIOSGA004955-PA LOB 38 136

Links

Other LOB family TFs
Other Oryza indica TFs

247 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PABG_05669 Paracoccidioides brasiliensis PABG_05669 N
PCH_Pc22g16640 Penicillium rubens PCH_Pc22g16640 N
SBOR_5781 Sclerotinia borealis SBOR_5781 N
Pc22g16640 Penicillium chrysogenum Pc22g16640 N