Bra025294 (Brassica rapa)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 Bra025294 T245067_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LOB
M06966_2.00 		Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH
DCCKCCKYHDYYDCCGCCGBN		 Dap-seq
OMalley et al.(2016)
LOB_col_a 		0.808 0.808
LBD6
M06955_2.00 		Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN
NHDYCKCCGYHDHHNCCGSCG		 Dap-seq
OMalley et al.(2016)
AS2_col_a 		0.707 0.707
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra025294.1-P LOB 12 110

Links

Other LOB family TFs
Other Brassica rapa TFs

202 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSNLEG00000008620 Nomascus leucogenys ENSNLEG00000008620 N
Myotis_brandtii_THAP3_10024041 Myotis brandtii Myotis_brandtii_THAP3_10024041 N
ENSP00000383703 Macaca fascicularis ENSP00000383703 N
ENSBTAP00000014893-D1 Bos grunniens ENSBTAP00000014893-D1 N
ENSSTOG00000003655 Ictidomys tridecemlineatus ENSSTOG00000003655 N
ENSSSCG00000003378 Sus scrofa ENSSSCG00000003378 N
ENSSHAG00000008023 Sarcophilus harrisii ENSSHAG00000008023 N
THAP3 Pteropus vampyrus ENSPVAG00000013024 N
THAP3 Pan troglodytes ENSPTRG00000000093 N
ENSPSIG00000004751 Pelodiscus sinensis ENSPSIG00000004751 N
ENSPPYG00000001935 Pongo abelii ENSPPYG00000001935 N
ENSPANG00000000281 Papio anubis ENSPANG00000000281 N
THAP3 Ochotona princeps ENSOPRG00000001961 N
THAP3 Otolemur garnettii ENSOGAG00000029491 N
ENSOARG00000011230 Ovis aries ENSOARG00000011230 N
ENSOANG00000029971 Ornithorhynchus anatinus ENSOANG00000029971 N
THAP3 Bos taurus ENSBTAG00000011214 N
THAP3 Monodelphis domestica ENSMODG00000005922 N
THAP3 Macaca mulatta ENSMMUG00000002047 N
ENSMEUG00000002039 Macropus eugenii ENSMEUG00000002039 N
THAP3 Loxodonta africana ENSLAFG00000015981 N
ENSGGOG00000006842 Gorilla gorilla ENSGGOG00000006842 N
THAP3 Homo sapiens ENSG00000041988 N
THAP3 Felis catus ENSFCAG00000000662 N
THAP3 Erinaceus europaeus ENSEEUG00000003448 N
THAP3 Equus caballus ENSECAG00000009778 N
THAP3 Dasypus novemcinctus ENSDNOG00000013851 N
ENSCSAG00000000749 Chlorocebus sabaeus ENSCSAG00000000749 N
THAP3 Cavia porcellus ENSCPOG00000021946 N
THAP3 Callithrix jacchus ENSCJAG00000000237 N
THAP3 Canis familiaris ENSCAFG00000019625 N