PGSC0003DMG400025400 (Solanum tuberosum)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 PGSC0003DMG400025400 T245835_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD4
M02261_2.00 		Arabidopsis thaliana
VDNVCGSNNN
NNNSCGBNHB		 PBM
Weirauch et al.(2014)
pTH7515 		0.744 0.744
gw1.238.28.1
M02262_2.00 		Physcomitrella patens
NNNNNVNGSN
NSCNBNNNNN		 PBM
Weirauch et al.(2014)
pTH8459 		0.718 0.718
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400065345 LOB 1 39
PGSC0003DMT400065346 LOB 45 143

Links

Other LOB family TFs
Other Solanum tuberosum TFs

366 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
M407DRAFT_247126 Tulasnella calospora M407DRAFT_247126 I 0.000
M407DRAFT_127560 Tulasnella calospora M407DRAFT_127560 I 0.000
DEHA2B04070g Debaryomyces hansenii DEHA2B04070g N 0.000
e_gww1.3.1.128.1 Pichia stipitis e_gww1.3.1.128.1 N 0.000
SPAPADRAFT_136216 Spathaspora passalidarum SPAPADRAFT_136216 N 0.000
PV07_10612 Cladophialophora immunda PV07_10612 N 0.000
PICST_57681 Scheffersomyces stipitis PICST_57681 N 0.000
PGUG_03167 Meyerozyma guilliermondii PGUG_03167 N 0.000
PGUG_03166 Meyerozyma guilliermondii PGUG_03166 N 0.000
GNLVRS01_PISO0B07987g Millerozyma farinosa GNLVRS01_PISO0B07987g N 0.000
GNLVRS01_PISO0A07920g Millerozyma farinosa GNLVRS01_PISO0A07920g N 0.000
G210_2898 Candida maltosa G210_2898 N 0.000
CLUG_02329 Candida lusitaniae CLUG_02329 N 0.000
DEHA2B04048g Debaryomyces hansenii DEHA2B04048g N 0.000
CTRG_01280 Candida tropicalis CTRG_01280 N 0.000
CORT_0A09500 Candida orthopsilosis CORT_0A09500 N 0.000
CLUG_02329 Clavispora lusitaniae CLUG_02329 N 0.000
CD36_16710 Candida dubliniensis CD36_16710 N 0.000
CaO19.9075 Candida albicans CaO19.9075 N 0.000
CaO19.1499 Candida albicans CaO19.1499 N 0.000
CANTEDRAFT_100135 Candida tenuis CANTEDRAFT_100135 N 0.000
PGUG_03167 Candida guilliermondii PGUG_03167 N 0.000
PGUG_03166 Candida guilliermondii PGUG_03166 N 0.000
CPAG_03070 Candida parapsilosis CPAG_03070 N 0.000