Si037727m.g (Setaria italica)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 Si037727m.g T246063_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD16
M00870_2.00 		Arabidopsis thaliana
DNHHYVCGG
CCGBRDDNH		 PBM
Franco-Zorrilla et al.(2014)
LBD16 		0.727 0.727
LBD16
M06958_2.00 		Arabidopsis thaliana
SCGGAAAWNVCGSMR
YKSCGBNWTTTCCGS		 Dap-seq
OMalley et al.(2016)
ASL18_col_a 		0.727 0.727
LBD16
M06959_2.00 		Arabidopsis thaliana
SCDBDWTTYVCGSHDN
NHDSCGBRAAWHVHGS		 Dap-seq
OMalley et al.(2016)
ASL18_colamp_a 		0.727 0.727
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Si037727m LOB 14 113

Links

Other LOB family TFs
Other Setaria italica TFs

154 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_02791 Aegilops tauschii F775_02791 I
orange1.1g008680m.g Citrus sinensis orange1.1g008680m.g I
Ciclev10019546m.g Citrus clementina Ciclev10019546m.g I
TRIUR3_23102 Triticum urartu TRIUR3_23102 I
Traes_2BS_186EA570A Triticum aestivum Traes_2BS_186EA570A I
Traes_2BL_69E6AB6D1 Triticum aestivum Traes_2BL_69E6AB6D1 I
Traes_2AS_C2A4AFE6F Triticum aestivum Traes_2AS_C2A4AFE6F I
Traes_2AL_B45245746 Triticum aestivum Traes_2AL_B45245746 I
Solyc10g009080.2 Solanum lycopersicum Solyc10g009080.2 I
Si032170m.g Setaria italica Si032170m.g I
Si031154m.g Setaria italica Si031154m.g I
MLOC_69667 Hordeum vulgare MLOC_69667 I
MLOC_13032 Hordeum vulgare MLOC_13032 I
GSMUA_Achr2G03070_001 Musa acuminata GSMUA_Achr2G03070_001 I
GSMUA_Achr1G08440_001 Musa acuminata GSMUA_Achr1G08440_001 I
BRADI1G26720 Brachypodium distachyon BRADI1G26720 I
Sb02g034180 Sorghum bicolor Sb02g034180 N
GRMZM2G113779 Zea mays GRMZM2G113779 N
Cucsa.046310 Cucumis sativus Cucsa.046310 N
GRMZM2G067624 Zea mays GRMZM2G067624 N
Pavir.Bb02800 Panicum virgatum Pavir.Bb02800 N