Ca_08998 (Cicer arietinum)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Ca_08998 T246293_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD4
M02261_2.00 		Arabidopsis thaliana
VDNVCGSNNN
NNNSCGBNHB		 PBM
Weirauch et al.(2014)
pTH7515 		0.778 0.778
gw1.238.28.1
M02262_2.00 		Physcomitrella patens
NNNNNVNGSN
NSCNBNNNNN		 PBM
Weirauch et al.(2014)
pTH8459 		0.737 0.737
LOB
M06966_2.00 		Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH
DCCKCCKYHDYYDCCGCCGBN		 Dap-seq
OMalley et al.(2016)
LOB_col_a 		0.717 0.717
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ca_08998 LOB 6 104

Links

Other LOB family TFs
Other Cicer arietinum TFs

302 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Zfp1 Mus musculus ENSMUSG00000055835 D
ZFP1 Homo sapiens ENSG00000184517 D
Zfp1 Rattus norvegicus ENSRNOG00000019059 I
ZFP1 Oryctolagus cuniculus ENSOCUG00000001924 I
ZFP1 Otolemur garnettii ENSOGAG00000001902 I
ZFP1 Ochotona princeps ENSOPRG00000006123 I
ENSPANG00000016568 Papio anubis ENSPANG00000016568 I
ZFP1 Procavia capensis ENSPCAG00000007561 I
ENSPPYG00000007556 Pongo abelii ENSPPYG00000007556 I
ZFP1 Pan troglodytes ENSPTRG00000008354 I
ENSNLEG00000013001 Nomascus leucogenys ENSNLEG00000013001 I
ZFP1 Sorex araneus ENSSARG00000013922 I
ZFP1 Sus scrofa ENSSSCG00000022668 I
ENSSTOG00000022317 Ictidomys tridecemlineatus ENSSTOG00000022317 I
ZFP1 Tupaia belangeri ENSTBEG00000011217 I
ZFP1 Tursiops truncatus ENSTTRG00000008949 I
ZFP1 Vicugna pacos ENSVPAG00000012526 I
ENSP00000377080 Macaca fascicularis ENSP00000377080 I
Myotis_brandtii_ZFP1_10035453 Myotis brandtii Myotis_brandtii_ZFP1_10035453 I
ZFP1 Felis catus ENSFCAG00000024047 I
ZFP1 Bos taurus ENSBTAG00000000868 I
ZFP1 Canis familiaris ENSCAFG00000020085 I
ZFP1 Choloepus hoffmanni ENSCHOG00000003880 I
ZFP1 Callithrix jacchus ENSCJAG00000014349 I
ZFP1 Cavia porcellus ENSCPOG00000000634 I
ENSDNOG00000006405 Dasypus novemcinctus ENSDNOG00000006405 I
ENSDNOG00000010525 Dasypus novemcinctus ENSDNOG00000010525 I
Zfp1 Dipodomys ordii ENSDORG00000011934 I
ENSOARG00000006461 Ovis aries ENSOARG00000006461 I
ZFP1 Gorilla gorilla ENSGGOG00000006121 I
ZFP1 Loxodonta africana ENSLAFG00000003125 I
ZFP1 Microcebus murinus ENSMICG00000015124 I
ZFP1 Myotis lucifugus ENSMLUG00000002042 I
ZFP1 Macaca mulatta ENSMMUG00000011587 I
ENSMPUG00000009946 Mustela putorius furo ENSMPUG00000009946 I
ENSAMEG00000001261 Ailuropoda melanoleuca ENSAMEG00000001261 I