Cagra.2475s0001 (Capsella grandiflora)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Cagra.2475s0001 T246733_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD6
M06955_2.00 		Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN
NHDYCKCCGYHDHHNCCGSCG		 Dap-seq
OMalley et al.(2016)
AS2_col_a 		0.707 0.707
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.2475s0001.1.p LOB 5 103

Links

Other LOB family TFs
Other Capsella grandiflora TFs

120 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O1_02330 Capronia coronata A1O1_02330 N
A1O3_00698 Capronia epimyces A1O3_00698 N
A1O5_00676 Cladophialophora psammophila A1O5_00676 N
A1O9_09692 Exophiala aquamarina A1O9_09692 N
G647_04136 Cladophialophora carrionii G647_04136 N
HMPREF1120_02610 Exophiala dermatitidis HMPREF1120_02610 N
HMPREF1541_08937 Cyphellophora europaea HMPREF1541_08937 N
PV04_04715 Capronia semiimmersa PV04_04715 N
PV05_02199 Exophiala xenobiotica PV05_02199 N
PV06_01586 Exophiala oligosperma PV06_01586 N
PV07_05822 Cladophialophora immunda PV07_05822 N
PV08_02365 Exophiala spinifera PV08_02365 N
PV10_06407 Exophiala mesophila PV10_06407 N
Z517_06996 Fonsecaea pedrosoi Z517_06996 N
Z518_00680 Rhinocladiella mackenziei Z518_00680 N
Z519_00671 Cladophialophora bantiana Z519_00671 N