CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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evm.TU.supercontig_25.41
(
Carica papaya
)
LOB
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03195 (DUF260)
IPR004883
evm.TU.supercontig_25.41
T246888_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
evm.model.supercontig_25.41
LOB
30
128
ACAACKYQRRKCAPDCILAPYFPHDRQQQFLNAHKLFGVSNITKIIRNLDPPEKDAAMRTIIIQSDVRAKDPVGGCCRIIRDLHHQILYTKTELDMVLH
Links
Other
LOB
family TFs
Other
Carica papaya
TFs
35 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ANCDUO_17222
Ancylostoma duodenale
ANCDUO_17222
N
CGOC_0001347601
Cylicostephanus goldi
CGOC_0001347601
N
GPLIN_000554300
Globodera pallida
GPLIN_000554300
N
maker-nMf.1.1.scaf00641-snap-gene-0.11
Meloidogyne floridensis
maker-nMf.1.1.scaf00641-snap-gene-0.11
N
NBR_0000655401
Nippostrongylus brasiliensis
NBR_0000655401
N
NECAME_00548
Necator americanus
NECAME_00548
N
SROB_0000835501
Schistosoma rodhaini
SROB_0000835501
N
TTAC_0000382701
Hydatigera taeniaeformis
TTAC_0000382701
N