fgenesh2_kg.5__2307__AT3G58630.1 (Arabidopsis lyrata)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 fgenesh2_kg.5__2307__AT3G58630.1 T249066_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G58630
M06976_2.00 		Arabidopsis thaliana
HNTCGCCGGARWHDN
NHDWYTCCGGCGAND		 Dap-seq
OMalley et al.(2016)
AT3G58630_col_a 		0.971 0.973
AT3G58630
M06977_2.00 		Arabidopsis thaliana
NNTCGCCGGARWHDN
NHDWYTCCGGCGANN		 Dap-seq
OMalley et al.(2016)
AT3G58630_colamp_a 		0.971 0.973
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.5__2307__AT3G58630.1 MADF 37 127

Links

Other MADF family TFs
Other Arabidopsis lyrata TFs

72 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
WUBG_15277 Wuchereria bancrofti WUBG_15277 N
Bm7498 Brugia malayi Bm7498 N
LOAG_01817 Loa loa LOAG_01817 N
WBGene00241030 Onchocerca volvulus WBGene00241030 N
ASU_12009 Ascaris suum ASU_12009 N
BTMF_0000874701 Brugia timori BTMF_0000874701 N
DME_0000949601 Dracunculus medinensis DME_0000949601 N
EEL_0000981001 Elaeophora elaphi EEL_0000981001 N
nAv.1.0.1.g10127 Acanthocheilonema viteae nAv.1.0.1.g10127 N
nDi.2.2.2.g05094 Dirofilaria immitis nDi.2.2.2.g05094 N
nOo.2.0.1.g06391 Onchocerca ochengi nOo.2.0.1.g06391 N
OFLC_0000249901 Onchocerca flexuosa OFLC_0000249901 N
TCLT_0000685301 Thelazia callipaeda TCLT_0000685301 N