Cagra.0769s0020 (Capsella grandiflora)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Cagra.0769s0020 T250604_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ASIL1
M02264_2.00 		Arabidopsis thaliana
NNDHCGDHNN
NNDHCGDHNN		 PBM
Weirauch et al.(2014)
pTH7464 		0.957 0.857
ASIL2
M06973_2.00 		Arabidopsis thaliana
TCRCCGGARAH
DTYTCCGGYGA		 Dap-seq
OMalley et al.(2016)
At3g14180_col 		0.815 0.629
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.0769s0020.1.p MADF 102 177

Links

Other MADF family TFs
Other Capsella grandiflora TFs

47 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ADR1 Saccharomyces cerevisiae YDR216W D 0.000
AWRI1499_1053 Brettanomyces bruxellensis AWRI1499_1053 I 0.000
KLLA0_F13046g Kluyveromyces lactis KLLA0_F13046g I 0.000
KNAG_0M00350 Kazachstania naganishii KNAG_0M00350 I 0.000
KUCA_T00002767001 Kuraishia capsulata KUCA_T00002767001 I 0.000
NDAI_0C04860 Naumovozyma dairenensis NDAI_0C04860 I 0.000
PAS_chr4_0487 Komagataella pastoris PAS_chr4_0487 I 0.000
SU7_2617 Saccharomyces arboricola SU7_2617 I 0.000
4112_Multiple Saccharomyces mikatae 4112_Multiple I 0.000
4528_Multiple Saccharomyces bayanus 4528_Multiple I 0.000
XP_002493922.1 Pichia pastoris XP_002493922.1 I 0.000