Cagra.20992s0001 (Capsella grandiflora)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Cagra.20992s0001 T250608_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT-GTL1
M06968_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_col_a 		0.869 0.672
AT-GTL1
M06969_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_colamp_a 		0.869 0.672
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.20992s0001.1.p MADF 59 129
Cagra.20992s0001.1.p MADF 412 484

Links

Other MADF family TFs
Other Capsella grandiflora TFs

191 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Neurog1 Mus musculus ENSMUSG00000048904 D 0.000
NEUROG1 Homo sapiens ENSG00000181965 D 0.000
ENSSSCG00000025347 Sus scrofa ENSSSCG00000025347 I 0.000
NEUROG1 Ornithorhynchus anatinus ENSOANG00000003865 I 0.000
NEUROG1 Oryctolagus cuniculus ENSOCUG00000004405 I 0.000
NEUROG1 Otolemur garnettii ENSOGAG00000033152 I 0.000
ENSPANG00000004163 Papio anubis ENSPANG00000004163 I 0.000
ENSPPYG00000015801 Pongo abelii ENSPPYG00000015801 I 0.000
NEUROG1 Pan troglodytes ENSPTRG00000017258 I 0.000
Neurog1 Rattus norvegicus ENSRNOG00000022405 I 0.000
neurog2.L Xenopus laevis XB-GENE-6077660 I 0.000
ENSSTOG00000022759 Ictidomys tridecemlineatus ENSSTOG00000022759 I 0.000
ENSP00000317580 Macaca fascicularis ENSP00000317580 I 0.000
Myotis_brandtii_Cxcl14_10032619 Myotis brandtii Myotis_brandtii_Cxcl14_10032619 I 0.000
Ogr17531 Ophisaurus gracilis Ogr17531 I 0.000
Pvit_01880 Pogona vitticeps Pvit_01880 I 0.000
ENSAMEG00000017891 Ailuropoda melanoleuca ENSAMEG00000017891 I 0.000
ENSNLEG00000018460 Nomascus leucogenys ENSNLEG00000018460 I 0.000
ENSMPUG00000019792 Mustela putorius furo ENSMPUG00000019792 I 0.000
ENSMODG00000014458 Monodelphis domestica ENSMODG00000014458 I 0.000
NEUROG1 Macaca mulatta ENSMMUG00000004770 I 0.000
NEUROG1 Myotis lucifugus ENSMLUG00000004571 I 0.000
ENSMEUG00000001133 Macropus eugenii ENSMEUG00000001133 I 0.000
NEUROG1 Loxodonta africana ENSLAFG00000010799 I 0.000
ENSLACG00000010664 Latimeria chalumnae ENSLACG00000010664 I 0.000
NEUROG1 Gorilla gorilla ENSGGOG00000002841 I 0.000
NEUROG1 Dasypus novemcinctus ENSDNOG00000018026 I 0.000
ENSCSAG00000000502 Chlorocebus sabaeus ENSCSAG00000000502 I 0.000
NEUROG1 Cavia porcellus ENSCPOG00000020630 I 0.000
NEUROG1 Callithrix jacchus ENSCJAG00000005899 I 0.000
NEUROG1 Canis familiaris ENSCAFG00000001083 I 0.000
NEUROG1 Bos taurus ENSBTAG00000003331 I 0.000