Cagra.20992s0002 (Capsella grandiflora)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Cagra.20992s0002 T250609_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT1G76880
M06970_2.00 		Arabidopsis thaliana
RHRGTAAAAWNDDDWW
WWHHHNWTTTTACYDY		 Dap-seq
OMalley et al.(2016)
AT1G76880_col_a 		0.868 0.816
AT-GTL1
M06968_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_col_a 		0.832 0.669
AT-GTL1
M06969_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_colamp_a 		0.832 0.669
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.20992s0002.1.p MADF 84 152
Cagra.20992s0002.1.p MADF 404 476

Links

Other MADF family TFs
Other Capsella grandiflora TFs

188 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PK05128.1 Cannabis sativa PK05128.1 D 0.000
OS02G0266800 Oryza sativa OS02G0266800 D 0.000
cassava18832.valid.m1 Manihot esculenta cassava18832.valid.m1 I 0.000
evm.TU.supercontig_52.101 Carica papaya evm.TU.supercontig_52.101 I 0.000
Ciclev10020133m.g Citrus clementina Ciclev10020133m.g I 0.000
Ciclev10001051m.g Citrus clementina Ciclev10001051m.g I 0.000
Aquca_017_00582 Aquilegia coerulea Aquca_017_00582 I 0.000
mgf012838m Mimulus guttatus mgf012838m I 0.000
mgf009803m Mimulus guttatus mgf009803m I 0.000
gw1.220.22.1 Physcomitrella patens gw1.220.22.1 I 0.000
estExt_fgenesh1_pg.C_2060068 Physcomitrella patens estExt_fgenesh1_pg.C_2060068 I 0.000
Cucsa.388800 Cucumis sativus Cucsa.388800 I 0.000
cassava22706.valid.m1 Manihot esculenta cassava22706.valid.m1 I 0.000
gene16561-v1.0-hybrid Fragaria vesca gene16561-v1.0-hybrid I 0.000
29883.m001986 Ricinus communis 29883.m001986 I 0.000
29598.m000468 Ricinus communis 29598.m000468 I 0.000
Pm020231 Prunus mume Pm020231 I 0.000
Cla015037 Citrullus lanatus Cla015037 I 0.000
Ca_03753 Cicer arietinum Ca_03753 I 0.000
BZO2H3 Vitis vinifera VIT_14s0030g02200 I 0.000
TCM_026349 Theobroma cacao TCM_026349 I 0.000
AMTR_s00002p00268140 Amborella trichopoda AMTR_s00002p00268140 I 0.000
orange1.1g012287m.g Citrus sinensis orange1.1g012287m.g I 0.000
PDK_20s1417191g003 Phoenix dactylifera PDK_20s1417191g003 I 0.000
PK11472.1 Cannabis sativa PK11472.1 I 0.000
Thhalv10004611m.g Eutrema salsugineum Thhalv10004611m.g I 0.000
SapurV1A.0729s0180 Salix purpurea SapurV1A.0729s0180 I 0.000
SapurV1A.0110s0140 Salix purpurea SapurV1A.0110s0140 I 0.000
SapurV1A.0006s1330 Salix purpurea SapurV1A.0006s1330 I 0.000
Pavir.Ab00505 Panicum virgatum Pavir.Ab00505 I 0.000
Pavir.Aa03364 Panicum virgatum Pavir.Aa03364 I 0.000
orange1.1g013166m.g Citrus sinensis orange1.1g013166m.g I 0.000
TCM_004222 Theobroma cacao TCM_004222 I 0.000
MDP0000270365 Malus domestica MDP0000270365 I 0.000
MDP0000176747 Malus domestica MDP0000176747 I 0.000
Lus10015913.g Linum usitatissimum Lus10015913.g I 0.000
Lus10006590.g Linum usitatissimum Lus10006590.g I 0.000
Gorai.007G277300 Gossypium raimondii Gorai.007G277300 I 0.000
Gorai.007G141500 Gossypium raimondii Gorai.007G141500 I 0.000
Gorai.004G246700 Gossypium raimondii Gorai.004G246700 I 0.000
Gorai.004G218300 Gossypium raimondii Gorai.004G218300 I 0.000
Gorai.004G075400 Gossypium raimondii Gorai.004G075400 I 0.000
GSMUA_Achr4G28530_001 Musa acuminata GSMUA_Achr4G28530_001 I 0.000
Solyc01g097330.2 Solanum lycopersicum Solyc01g097330.2 I 0.000
OMERI02G12230 Oryza meridionalis OMERI02G12230 I 0.000
OMERI02G06470 Oryza meridionalis OMERI02G06470 I 0.000
OGLUM02G11500 Oryza glumaepatula OGLUM02G11500 I 0.000
OGLUM02G05620 Oryza glumaepatula OGLUM02G05620 I 0.000
OBART02G11580 Oryza barthii OBART02G11580 I 0.000
OBART02G05680 Oryza barthii OBART02G05680 I 0.000
OB06G31430 Oryza brachyantha OB06G31430 I 0.000
LPERR06G19690 Leersia perrieri LPERR06G19690 I 0.000
LPERR02G04950 Leersia perrieri LPERR02G04950 I 0.000
OMERI06G23650 Oryza meridionalis OMERI06G23650 I 0.000
GSMUA_Achr10G08670_001 Musa acuminata GSMUA_Achr10G08670_001 I 0.000
GRMZM2G098904 Zea mays GRMZM2G098904 I 0.000
GLYMA19G43420 Glycine max GLYMA19G43420 I 0.000
GLYMA03G40730 Glycine max GLYMA03G40730 I 0.000
Bra020620 Brassica rapa Bra020620 I 0.000
BGIOSGA020743 Oryza indica BGIOSGA020743 I 0.000
BGIOSGA020738 Oryza indica BGIOSGA020738 I 0.000
BGIOSGA007649 Oryza indica BGIOSGA007649 I 0.000
BGIOSGA006734 Oryza indica BGIOSGA006734 I 0.000
ORUFI06G25410 Oryza rufipogon ORUFI06G25410 I 0.000
Si017778m.g Setaria italica Si017778m.g I 0.000
Sb04g005020 Sorghum bicolor Sb04g005020 I 0.000
PRUPE_ppa005367mg Prunus persica PRUPE_ppa005367mg I 0.000
POPTR_0013s03800 Populus trichocarpa POPTR_0013s03800 I 0.000
POPTR_0002s04660 Populus trichocarpa POPTR_0002s04660 I 0.000
PGSC0003DMG400019455 Solanum tuberosum PGSC0003DMG400019455 I 0.000
OS06G0662200 Oryza sativa OS06G0662200 I 0.000
OS02G0175100 Oryza sativa OS02G0175100 I 0.000
ONIVA02G06040 Oryza nivara ONIVA02G06040 I 0.000
ORUFI02G11610 Oryza rufipogon ORUFI02G11610 I 0.000
ORUFI02G05790 Oryza rufipogon ORUFI02G05790 I 0.000
ORGLA06G0198800 Oryza glaberrima ORGLA06G0198800 I 0.000
ORGLA02G0104200 Oryza glaberrima ORGLA02G0104200 I 0.000
ORGLA02G0052000 Oryza glaberrima ORGLA02G0052000 I 0.000
OPUNC06G21410 Oryza punctata OPUNC06G21410 I 0.000
OPUNC02G10230 Oryza punctata OPUNC02G10230 I 0.000
ONIVA06G27820 Oryza nivara ONIVA06G27820 I 0.000
ONIVA02G12920 Oryza nivara ONIVA02G12920 I 0.000
cassava36728.valid.m1 Manihot esculenta cassava36728.valid.m1 N 0.000
SapurV1A.0860s0020 Salix purpurea SapurV1A.0860s0020 N 0.000
SapurV1A.2969s0020 Salix purpurea SapurV1A.2969s0020 N 0.000