Cagra.4686s0014 (Capsella grandiflora)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Cagra.4686s0014 T250614_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G10030
M01258_2.00 		Arabidopsis thaliana
NRMCGTTAWNN
NNWTAACGKYN		 PBM
Lambert et al.(2019)
pTH11538 		0.967 0.959
AT3G10030
M06971_2.00 		Arabidopsis thaliana
HRHCKCCGTTANND
HNNTAACGGMGDYD		 Dap-seq
OMalley et al.(2016)
AT3G10030_col_a 		0.967 0.959
AT3G10030
M06972_2.00 		Arabidopsis thaliana
HWRHMKCCGTTAAHD
HDTTAACGGMKDYWD		 Dap-seq
OMalley et al.(2016)
AT3G10030_colamp_a 		0.967 0.959
PK04914.1
M01262_2.00 		Cannabis sativa
DCCGTYAN
NTRACGGH		 PBM
Lambert et al.(2019)
pTH10098 		0.944 0.811
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.4686s0014.1.p MADF 163 244

Links

Other MADF family TFs
Other Capsella grandiflora TFs

68 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
VDBG_09596 Verticillium albo atrum VDBG_09596 N
CFIO01_02134 Colletotrichum fioriniae CFIO01_02134 N
Cob_03757 Colletotrichum orbiculare Cob_03757 N
CSUB01_08179 Colletotrichum sublineola CSUB01_08179 N
EPUS_01257 Endocarpon pusillum EPUS_01257 N
GLRG_09516 Colletotrichum graminicola GLRG_09516 N
OIDMADRAFT_174153 Oidiodendron maius OIDMADRAFT_174153 N
PVAR5_8893 Byssochlamys spectabilis PVAR5_8893 N
S40285_09237 Stachybotrys chlorohalonata S40285_09237 N
S40288_06769 Stachybotrys chartarum S40288_06769 N
VDBG_09596 Verticillium alfalfae VDBG_09596 N