Carubv10015256m.g (Capsella rubella)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Carubv10015256m.g T250626_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G10030
M01258_2.00 		Arabidopsis thaliana
NRMCGTTAWNN
NNWTAACGKYN		 PBM
Lambert et al.(2019)
pTH11538 		0.967 0.959
AT3G10030
M06971_2.00 		Arabidopsis thaliana
HRHCKCCGTTANND
HNNTAACGGMGDYD		 Dap-seq
OMalley et al.(2016)
AT3G10030_col_a 		0.967 0.959
AT3G10030
M06972_2.00 		Arabidopsis thaliana
HWRHMKCCGTTAAHD
HDTTAACGGMKDYWD		 Dap-seq
OMalley et al.(2016)
AT3G10030_colamp_a 		0.967 0.959
PK04914.1
M01262_2.00 		Cannabis sativa
DCCGTYAN
NTRACGGH		 PBM
Lambert et al.(2019)
pTH10098 		0.944 0.811
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10015256m MADF 163 244

Links

Other MADF family TFs
Other Capsella rubella TFs

68 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CTHT_0052090 Chaetomium thermophilum CTHT_0052090 I
CFIO01_00431 Colletotrichum fioriniae CFIO01_00431 N
CGGC5_1734 Colletotrichum gloeosporioides CGGC5_1734 N
CSUB01_01140 Colletotrichum sublineola CSUB01_01140 N
GLRG_09213 Colletotrichum graminicola GLRG_09213 N