Bra007067 (Brassica rapa)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Bra007067 T253243_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AP3
M08146_2.00 		Arabidopsis thaliana
WDCCMAAARWRGHAA
TTDCYWYTTTKGGHW		 ChIP-seq
Mathelier et al.(2014)
MA0556.1 		0.979 0.979
AP3
M10919_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADSB_Q2 		0.979 0.979
Q40513_TOBAC
M11001_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DEF_01 		0.896 0.896
Q8VWZ4_MALDO
M11026_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS13_01 		0.792 0.792
MADS16
M10971_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS16_01 		0.792 0.792
FBP1_PETHY
M10996_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP1_01 		0.750 0.750
AGL6
M06986_2.00 		Arabidopsis thaliana
TTWCCHAAAAWRGWAANWW
WWNTTWCYWTTTTDGGWAA		 Dap-seq
OMalley et al.(2016)
AGL6_col_a 		0.729 0.729
SOC1
M08425_2.00 		Arabidopsis thaliana
CCAAAAAWRGAAAND
HNTTTCYWTTTTTGG		 ChIP-chip
Mathelier et al.(2014)
MA0554.1 		0.729 0.729
SOC1
M10915_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL20_01 		0.729 0.729
Q9ATE3_PETHY
M11008_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP28_01 		0.729 0.729
O82699_MALDO
M11022_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS11_01 		0.729 0.729
MAD17_ORYSJ
M10961_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS17_01 		0.729 0.729
MADS6
M10967_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS6_01 		0.729 0.729
SEP2
M10916_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL4_01 		0.708 0.708
Q9ATF1_PETHY
M11013_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP9_01 		0.708 0.708
MADS18
M10973_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS18_01 		0.708 0.708
MADS2_PETHY
M10998_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_01 		0.708 0.708
Q9ST54_MALDO
M11029_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_04 		0.708 0.708
Q9LM09_TOBAC
M11016_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS4_01 		0.708 0.708
MADS50
M10968_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS50_01 		0.708 0.708
O82697_MALDO
M11020_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS7_01 		0.708 0.708
Q9AVU7_MALDO
M11027_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PI_01 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra007067.1-P MADS box 10 57

Links

Other MADS box family TFs
Other Brassica rapa TFs

406 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSSTOG00000022322 Ictidomys tridecemlineatus ENSSTOG00000022322 N 0.000
ZNF618 Oryctolagus cuniculus ENSOCUG00000002794 N 0.000
ZNF618 Otolemur garnettii ENSOGAG00000014816 N 0.000
ENSONIG00000015003 Oreochromis niloticus ENSONIG00000015003 N 0.000
ZNF618 Ochotona princeps ENSOPRG00000005497 N 0.000
ZNF618 Procavia capensis ENSPCAG00000000187 N 0.000
ENSPPYG00000019526 Pongo abelii ENSPPYG00000019526 N 0.000
ENSPSIG00000016588 Pelodiscus sinensis ENSPSIG00000016588 N 0.000
ZNF618 Pteropus vampyrus ENSPVAG00000011944 N 0.000
Zfp618 Rattus norvegicus ENSRNOG00000006719 N 0.000
ENSSHAG00000015909 Sarcophilus harrisii ENSSHAG00000015909 N 0.000
ZNF618 Sus scrofa ENSSSCG00000005484 N 0.000
ENSOARG00000006161 Ovis aries ENSOARG00000006161 N 0.000
ZNF618 Tupaia belangeri ENSTBEG00000000415 N 0.000
ZNF618 Taeniopygia guttata ENSTGUG00000002591 N 0.000
znf618 Tetraodon nigroviridis ENSTNIG00000018743 N 0.000
ZNF618 Tursiops truncatus ENSTTRG00000005353 N 0.000
Aan_R008050 Calypte anna Aan_R008050 N 0.000
Afo_R011854 Aptenodytes forsteri Afo_R011854 N 0.000
Alligator_sinensis_CCG016138.1 Alligator sinensis Alligator_sinensis_CCG016138.1 N 0.000
ENSP00000363241-D1 Bos grunniens ENSP00000363241-D1 N 0.000
ENSP00000363241 Macaca fascicularis ENSP00000363241 N 0.000
Myotis_brandtii_ZNF618_10028443 Myotis brandtii Myotis_brandtii_ZNF618_10028443 N 0.000
ZNF618 Gorilla gorilla ENSGGOG00000014177 N 0.000
ENSAMXG00000009099 Astyanax mexicanus ENSAMXG00000009099 N 0.000
ZNF618 Bos taurus ENSBTAG00000025659 N 0.000
ZNF618 Canis familiaris ENSCAFG00000003282 N 0.000
ZNF618 Cavia porcellus ENSCPOG00000010468 N 0.000
ZNF618 Dasypus novemcinctus ENSDNOG00000012611 N 0.000
Zfp618 Dipodomys ordii ENSDORG00000014008 N 0.000
ZNF618 Equus caballus ENSECAG00000020621 N 0.000
ZNF618 Felis catus ENSFCAG00000013342 N 0.000
ZNF618 Homo sapiens ENSG00000157657 N 0.000
znf618 Gasterosteus aculeatus ENSGACG00000016617 N 0.000
ZNF618 Gallus gallus ENSGALG00000008886 N 0.000
ENSAMEG00000012889 Ailuropoda melanoleuca ENSAMEG00000012889 N 0.000
ENSLACG00000009597 Latimeria chalumnae ENSLACG00000009597 N 0.000
ZNF618 Loxodonta africana ENSLAFG00000011286 N 0.000
ZNF618 Meleagris gallopavo ENSMGAG00000001586 N 0.000
ZNF618 Microcebus murinus ENSMICG00000015151 N 0.000
ZNF618 Macaca mulatta ENSMMUG00000008557 N 0.000
ZNF618 Monodelphis domestica ENSMODG00000004063 N 0.000
ENSMPUG00000008085 Mustela putorius furo ENSMPUG00000008085 N 0.000
Zfp618 Mus musculus ENSMUSG00000028358 N 0.000
ENSNLEG00000016765 Nomascus leucogenys ENSNLEG00000016765 N 0.000
ZNF618 Ornithorhynchus anatinus ENSOANG00000005539 N 0.000