Bra016544 (Brassica rapa)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Bra016544 T253287_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL65
M10901_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL65_01 		0.875 0.875
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra016544.1-P MADS box 10 57

Links

Other MADS box family TFs
Other Brassica rapa TFs

113 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
NAC083 Arabidopsis thaliana AT5G13180 D 0.000
Gorai.005G195300 Gossypium raimondii Gorai.005G195300 I 0.000
cassava12891.valid.m1 Manihot esculenta cassava12891.valid.m1 I 0.000
Cucsa.349370 Cucumis sativus Cucsa.349370 I 0.000
Aquca_021_00051 Aquilegia coerulea Aquca_021_00051 I 0.000
Bostr.2902s0053 Boechera stricta Bostr.2902s0053 I 0.000
Cagra.0596s0010 Capsella grandiflora Cagra.0596s0010 I 0.000
Carubv10002548m.g Capsella rubella Carubv10002548m.g I 0.000
Ciclev10032547m.g Citrus clementina Ciclev10032547m.g I 0.000
Eucgr.B03537 Eucalyptus grandis Eucgr.B03537 I 0.000
Eucgr.H03387 Eucalyptus grandis Eucgr.H03387 I 0.000
cassava1138.valid.m1 Manihot esculenta cassava1138.valid.m1 I 0.000
Gorai.012G125500 Gossypium raimondii Gorai.012G125500 I 0.000
MDP0000126517 Malus domestica MDP0000126517 I 0.000
MDP0000130123 Malus domestica MDP0000130123 I 0.000
orange1.1g030727m.g Citrus sinensis orange1.1g030727m.g I 0.000
SapurV1A.0173s0020 Salix purpurea SapurV1A.0173s0020 I 0.000
SapurV1A.0453s0210 Salix purpurea SapurV1A.0453s0210 I 0.000
Thhalv10014495m.g Eutrema salsugineum Thhalv10014495m.g I 0.000
PK12461.1 Cannabis sativa PK12461.1 I 0.000
chr1.CM0017.80.nc Lotus japonicus chr1.CM0017.80.nc I 0.000
POPTR_0001s13380 Populus trichocarpa POPTR_0001s13380 I 0.000
Bo2g011120 Brassica oleracea Bo2g011120 I 0.000
Bo4g181990 Brassica oleracea Bo4g181990 I 0.000
Bo9g168950 Brassica oleracea Bo9g168950 I 0.000
Bra006186 Brassica rapa Bra006186 I 0.000
Bra008849 Brassica rapa Bra008849 I 0.000
Bra021856 Brassica rapa Bra021856 I 0.000
Bra023395 Brassica rapa Bra023395 I 0.000
GLYMA08G47520 Glycine max GLYMA08G47520 I 0.000
GLYMA18G53954 Glycine max GLYMA18G53954 I 0.000
POPTR_0003s16490 Populus trichocarpa POPTR_0003s16490 I 0.000
PRUPE_ppa010222mg Prunus persica PRUPE_ppa010222mg I 0.000
ANAC083 Arabidopsis lyrata scaffold_601328.1 I 0.000
TCM_008477 Theobroma cacao TCM_008477 I 0.000
ANAC083 Vitis vinifera VIT_01s0146g00280 I 0.000
Cla001517 Citrullus lanatus Cla001517 I 0.000
Cla011059 Citrullus lanatus Cla011059 I 0.000
Pm007070 Prunus mume Pm007070 I 0.000
30128.m009035 Ricinus communis 30128.m009035 I 0.000
30147.m014441 Ricinus communis 30147.m014441 N 0.000
evm.TU.supercontig_4.138 Carica papaya evm.TU.supercontig_4.138 N 0.000
GSMUA_Achr10G11910_001 Musa acuminata GSMUA_Achr10G11910_001 N 0.000
Cucsa.095210 Cucumis sativus Cucsa.095210 N 0.000