CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

MEF2C *(Loxodonta africana)* MADS box
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00319 (SRF-TF)	IPR002100	ENSLAFG00000013761	T253694_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
MEF2C M02745_2.00	Homo sapiens	TWCTAWAAATAG	CTATTTWTAGWA	SELEX Jolma et al.(2010) MEF2C_dimer	0.891	0.891
MEF2C M05551_2.00	Homo sapiens	CYWWATWWGG	CCWWATWWRG	SELEX Yin et al.(2017) MEF2C_FL_HT-SELEX	0.891	0.891
MEF2C M08149_2.00	Homo sapiens	NDDMYAAAAATAGMH	DKCTATTTTTRKHHN	ChIP-seq Mathelier et al.(2014) MA0497.1	1.000	1.000
MEF2C M07980_2.00	Homo sapiens	NDDYYAAAAATAGHH	DDCTATTTTTRRHHN	ChIP-seq Gerstein et al.(2012) GM12878_MEF2C_HudsonAlpha	1.000	1.000
MEF2C M09248_2.00	Homo sapiens	DYYAAAAATARMH	DKYTATTTTTRRH	Misc Kulakovskiy et al.(2013) MEF2C_HUMAN.H11MO.0.A	0.891	0.891
Mef2c M09253_2.00	Mus musculus	DDMYAAAAATAGMHN	NDKCTATTTTTRKHH	Misc Kulakovskiy et al.(2013) MEF2C_MOUSE.H11MO.0.A	0.891	0.891
MEF2C M09597_2.00	Homo sapiens	DHYWDAAATARM	KYTATTTHWRDH	Misc Heinz et al.(2010) GM12878-Mef2c_GSE32465	1.000	1.000
MEF2C M10945_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$MEF2C_02	1.000	1.000
MEF2C M10946_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$MEF2C_Q4	1.000	1.000
MEF2C M05552_2.00	Homo sapiens	CYWWATWWGG	CCWWATWWRG	SELEX Yin et al.(2017) MEF2C_FL_Methyl-HT-SELEX	1.000	1.000
MEF2A M03340_2.00	Homo sapiens	KCTAWAAATAGM	KCTATTTWTAGM	SELEX Jolma et al.(2013) MEF2A_1	0.979	0.979
MEF2A M07979_2.00	Homo sapiens	NDDHYAAAAATARHH	DDYTATTTTTRDHHN	ChIP-seq Gerstein et al.(2012) GM12878_MEF2A_HudsonAlpha	0.979	0.979
MEF2A M08212_2.00	Homo sapiens	CTAWWWWTAG	CTAWWWWTAG	ChIP-seq Contrino et al.(2012) Mv88	0.870	0.870
MEF2A M08213_2.00	Homo sapiens	AAAATAGM	KCTATTTT	ChIP-seq Contrino et al.(2012) Mv90	0.870	0.870
MEF2A M09247_2.00	Homo sapiens	DYYAAAAATAGMH	DKCTATTTTTRRH	Misc Kulakovskiy et al.(2013) MEF2A_HUMAN.H11MO.0.A	0.979	0.979
Mef2a M09255_2.00	Mus musculus	DDCYAWAAATARMH	DKYTATTTWTRGHH	Misc Kulakovskiy et al.(2013) MEF2A_MOUSE.H11MO.0.A	0.979	0.979
Mef2a M09599_2.00	Mus musculus	CYNDAAATAG	CTATTTHNRG	Misc Heinz et al.(2010) HL1-Mef2a.biotin_GSE21529	0.979	0.979
MEF2A M10933_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AMEF2_Q6	0.870	0.870
MEF2A M10934_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HMEF2_Q6	0.870	0.870
MEF2A M10935_2.00	Homo sapiens	BTCTAAAAATAACYCY	RGRGTTATTTTTAGAV	Transfac Matys et al.(2006) V$MEF2_01	0.979	0.979
MEF2A M10936_2.00	Homo sapiens	BNNNDDDCTAWAAATAGMHNNN	NNNDKCTATTTWTAGHHHNNNV	Transfac Matys et al.(2006) V$MEF2_02	0.979	0.979
MEF2A M10937_2.00	Homo sapiens	NNNNDWKCTAWAAATAGMHHNN	NNDDKCTATTTWTAGMWHNNNN	Transfac Matys et al.(2006) V$MEF2_03	0.979	0.979
MEF2A M10938_2.00	Homo sapiens	NVTGTTRCTAWAAATAGAAHHN	NDDWTCTATTTWTAGYAACABN	Transfac Matys et al.(2006) V$MEF2_04	0.979	0.979
MEF2A M10939_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$MEF2A_05	0.979	0.979
MEF2A M10940_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$MEF2A_Q6	0.979	0.979
MEF2A M10941_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$MEF2_Q6_02	0.979	0.979
MEF2A M10942_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$MMEF2_Q6	0.870	0.870
MEF2A M10943_2.00	Homo sapiens	NDKCTAWAAATAGMHH	DDKCTATTTWTAGMHN	Transfac Matys et al.(2006) V$RSRFC4_01	0.870	0.870
MEF2A M10944_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$RSRFC4_Q2	0.979	0.979
MEF2B M03344_2.00	Homo sapiens	RCTAWAAATAGM	KCTATTTWTAGY	SELEX Jolma et al.(2013) MEF2B_1	0.848	0.848
MEF2D M03343_2.00	Homo sapiens	DCTAWAAATAGM	KCTATTTWTAGH	SELEX Jolma et al.(2013) MEF2D_1	0.938	0.938
MEF2D M05555_2.00	Homo sapiens	CYWWATWWGG	CCWWATWWRG	SELEX Yin et al.(2017) MEF2D_eDBD_HT-SELEX	0.938	0.938
MEF2B M05557_2.00	Homo sapiens	CYNDWWWHGG	CCDWWWHNRG	SELEX Yin et al.(2017) MEF2B_eDBD_HT-SELEX	0.848	0.848
MEF2D M09250_2.00	Homo sapiens	CTAWAAATAGMH	DKCTATTTWTAG	Misc Kulakovskiy et al.(2013) MEF2D_HUMAN.H11MO.0.A	0.938	0.938
Mef2d M09252_2.00	Mus musculus	DDCTAWAAATAGMH	DKCTATTTWTAGHH	Misc Kulakovskiy et al.(2013) MEF2D_MOUSE.H11MO.0.A	0.938	0.938
MEF2B M05559_2.00	Homo sapiens	CCVDWTATGGTAACA	TGTTACCATAWHBGG	SELEX Yin et al.(2017) MEF2B_FL_HT-SELEX	0.848	0.848
MEF2D M10957_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$MEF2D_Q4	0.938	0.938
MEF2D M05556_2.00	Homo sapiens	CYWWATWWGG	CCWWATWWRG	SELEX Yin et al.(2017) MEF2D_eDBD_Methyl-HT-SELEX	0.938	0.938
MEF2B M09251_2.00	Homo sapiens	CYWAAAATAGHHHH	DDDDCTATTTTWRG	Misc Kulakovskiy et al.(2013) MEF2B_HUMAN.H11MO.0.A	0.848	0.848
MEF2B M05558_2.00	Homo sapiens	CYWWWWWNGG	CCNWWWWWRG	SELEX Yin et al.(2017) MEF2B_eDBD_Methyl-HT-SELEX	0.848	0.848
MEF2B M05560_2.00	Homo sapiens	CCVDATATGGTAACR	YGTTACCATATHBGG	SELEX Yin et al.(2017) MEF2B_FL_Methyl-HT-SELEX	0.848	0.848
Mef2 M08214_2.00	Drosophila melanogaster	YTAWWWWTAR	YTAWWWWTAR	ChIP-seq Contrino et al.(2012) Mf26	0.875	0.875
Mef2b M10958_2.00	Mus musculus	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$MEF2B_02	0.804	0.804
For this family, TFs with SR scores > 0.700* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
ENSLAFP00000011521	MADS box	12	57	IGNDVNHVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQY
ENSLAFP00000023768	MADS box	10	57	RIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQY

Links
Other MADS box family TFs
Other *Loxodonta africana* TFs

506 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
ORUFI04G28640	Oryza rufipogon	ORUFI04G28640	N	0.000
Pavir.J06936	Panicum virgatum	Pavir.J06936	N	0.000
Pavir.Ga00332	Panicum virgatum	Pavir.Ga00332	N	0.000
TRIUR3_27184	Triticum urartu	TRIUR3_27184	N	0.000
Traes_2DL_C417E5A19	Triticum aestivum	Traes_2DL_C417E5A19	N	0.000
Traes_2BL_E2B676D40	Triticum aestivum	Traes_2BL_E2B676D40	N	0.000
Traes_2BL_59B9199D9	Triticum aestivum	Traes_2BL_59B9199D9	N	0.000
Traes_2AL_7FEF10153	Triticum aestivum	Traes_2AL_7FEF10153	N	0.000
Si011424m.g	Setaria italica	Si011424m.g	N	0.000
Sb06g030340	Sorghum bicolor	Sb06g030340	N	0.000
BHLH154	Oryza sativa	OS04G0641700	N	0.000
ILI1	Oryza indica	BGIOSGA014246	N	0.000
ORGLA04G0234000	Oryza glaberrima	ORGLA04G0234000	N	0.000
OPUNC04G24510	Oryza punctata	OPUNC04G24510	N	0.000
ONIVA04G25390	Oryza nivara	ONIVA04G25390	N	0.000
OMERI04G22430	Oryza meridionalis	OMERI04G22430	N	0.000
OGLUM04G26950	Oryza glumaepatula	OGLUM04G26950	N	0.000
OBART04G26980	Oryza barthii	OBART04G26980	N	0.000
OB04G33830	Oryza brachyantha	OB04G33830	N	0.000
F775_12405	Aegilops tauschii	F775_12405	N	0.000
F775_12062	Aegilops tauschii	F775_12062	N	0.000

MEF2C (Loxodonta africana) MADS box

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

506 Related TFs

MEF2C **(Loxodonta africana)
MADS box**